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Literature DB >> 17425457

Mass spectrometry-based strategies for characterization of histones and their post-translational modifications.

Xiaodan Su¹, Chen Ren, Michael A Freitas.

Abstract

Due to the intimate interactions between histones and DNA, the characterization of histones has become the focus of great attention. A series of mass spectrometry-based technologies have been dedicated to the characterization and quantitation of different histone forms. This review focuses on the discussion of mass spectrometry-based strategies used for the characterization of histones and their post-translational modifications.

Mesh：

Substances：
Histones

Year: 2007 PMID： 17425457 PMCID： PMC2572816 DOI： 10.1586/14789450.4.2.211

Source DB: PubMed Journal: Expert Rev Proteomics ISSN： 1478-9450 Impact factor: 3.940

181 in total

Review 1. Structure and functional relationships of archaeal and eukaryal histones and nucleosomes.

Authors: K Sandman; J N Reeve
Journal: Arch Microbiol Date: 2000-03 Impact factor: 2.552

2. Peptide sequence motif analysis of tandem MS data with the SALSA algorithm.

Authors: Daniel C Liebler; Beau T Hansen; Sean W Davey; Laura Tiscareno; Daniel E Mason
Journal: Anal Chem Date: 2002-01-01 Impact factor: 6.986

3. High-throughput mass spectrometric discovery of protein post-translational modifications.

Authors: M R Wilkins; E Gasteiger; A A Gooley; B R Herbert; M P Molloy; P A Binz; K Ou; J C Sanchez; A Bairoch; K L Williams; D F Hochstrasser
Journal: J Mol Biol Date: 1999-06-11 Impact factor: 5.469

4. Amino acid residue specific stable isotope labeling for quantitative proteomics.

Authors: Haining Zhu; Songqin Pan; Sheng Gu; E Morton Bradbury; Xian Chen
Journal: Rapid Commun Mass Spectrom Date: 2002 Impact factor: 2.419

Review 5. Protein degradation and protection against misfolded or damaged proteins.

Authors: Alfred L Goldberg
Journal: Nature Date: 2003-12-18 Impact factor: 49.962

Review 6. Histone variants: deviants?

Authors: Rohinton T Kamakaka; Sue Biggins
Journal: Genes Dev Date: 2005-02-01 Impact factor: 11.361

7. Liquid chromatography mass spectrometry profiling of histones.

Authors: Xiaodan Su; Naduparambil K Jacob; Ravindra Amunugama; David M Lucas; Amy R Knapp; Chen Ren; Melanie E Davis; Guido Marcucci; Mark R Parthun; John C Byrd; Richard Fishel; Michael A Freitas
Journal: J Chromatogr B Analyt Technol Biomed Life Sci Date: 2007-01-07 Impact factor: 3.205

8. Crystal structure of the nucleosome core particle at 2.8 A resolution.

Authors: K Luger; A W Mäder; R K Richmond; D F Sargent; T J Richmond
Journal: Nature Date: 1997-09-18 Impact factor: 49.962

9. Peptide mass mapping of acetylated isoforms of histone H4 from mouse lymphosarcoma cells treated with histone deacetylase (HDACs) inhibitors.

Authors: Chen Ren; Liwen Zhang; Michael A Freitas; Kalpana Ghoshal; Mark R Parthun; Samson T Jacob
Journal: J Am Soc Mass Spectrom Date: 2005-10 Impact factor: 3.109

Review 10. Histone variants: are they functionally heterogeneous?

Authors: D T Brown
Journal: Genome Biol Date: 2001-07-05 Impact factor: 13.583

21 in total

Review 1. Chemical and biochemical approaches in the study of histone methylation and demethylation.

Authors: Keqin Kathy Li; Cheng Luo; Dongxia Wang; Hualiang Jiang; Y George Zheng
Journal: Med Res Rev Date: 2012-07 Impact factor: 12.944

2. Comparing and combining capillary electrophoresis electrospray ionization mass spectrometry and nano-liquid chromatography electrospray ionization mass spectrometry for the characterization of post-translationally modified histones.

Authors: Bettina Sarg; Klaus Faserl; Leopold Kremser; Bernhard Halfinger; Roberto Sebastiano; Herbert H Lindner
Journal: Mol Cell Proteomics Date: 2013-05-29 Impact factor: 5.911

3. High throughput characterization of combinatorial histone codes.

Authors: Nicolas L Young; Peter A DiMaggio; Mariana D Plazas-Mayorca; Richard C Baliban; Christodoulos A Floudas; Benjamin A Garcia
Journal: Mol Cell Proteomics Date: 2009-08-04 Impact factor: 5.911

4. Identification of histone mutants that are defective for transcription-coupled nucleosome occupancy.

Authors: Sarah J Hainer; Joseph A Martens
Journal: Mol Cell Biol Date: 2011-07-05 Impact factor: 4.272

Review 5. Chatting histone modifications in mammals.

Authors: Annalisa Izzo; Robert Schneider
Journal: Brief Funct Genomics Date: 2010-12 Impact factor: 4.241

6. Analysis of Histone Modifications from Tryptic Peptides of Deuteroacetylated Isoforms.

Authors: Elisabeth Hersman; Dwella M Nelson; Wendell P Griffith; Christine Jelinek; Robert J Cotter
Journal: Int J Mass Spectrom Date: 2012-02-15 Impact factor: 1.986

Review 7. Quantification of histone modifications using ¹⁵N metabolic labeling.

Authors: Chunchao Zhang; Yifan Liu; Philip C Andrews
Journal: Methods Date: 2013-02-27 Impact factor: 3.608

8. Quantitative proteomics reveals that the specific methyltransferases Txr1p and Ezl2p differentially affect the mono-, di- and trimethylation states of histone H3 lysine 27 (H3K27).

Authors: Chunchao Zhang; Anthony J Molascon; Shan Gao; Yifan Liu; Philip C Andrews
Journal: Mol Cell Proteomics Date: 2012-11-13 Impact factor: 5.911

9. Alterations of histone H1 phosphorylation during bladder carcinogenesis.

Authors: Kelly H Telu; Besma Abbaoui; Jennifer M Thomas-Ahner; Debra L Zynger; Steven K Clinton; Michael A Freitas; Amir Mortazavi
Journal: J Proteome Res Date: 2013-06-17 Impact factor: 4.466

10. Unambiguous determination of isobaric histone modifications by reversed-phase retention time and high-mass accuracy.

Authors: Lanhao Yang; Shengjiang Tu; Chen Ren; Esther M M Bulloch; Chung-Lin Liao; Ming-Daw Tsai; Michael A Freitas
Journal: Anal Biochem Date: 2009-08-21 Impact factor: 3.365