| Literature DB >> 17417600 |
Muhammad A Ahad1, Tom Missotten, Atiyeh Abdallah, Penny A Lympany, Susan Lightman.
Abstract
PURPOSE: Chemokines are important inflammatory mediators that play a crucial role in uveitis. Polymorphisms in chemokine genes can alter the expression of these genes in the inflammatory cells, which, in turn, can affect the clinical phenotype of the disease. The purpose of this study was to identify polymorphisms in chemokine genes that can predict visual outcome in patients with immune-mediated posterior segment uveitis.Entities:
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Year: 2007 PMID: 17417600 PMCID: PMC2642933
Source DB: PubMed Journal: Mol Vis ISSN: 1090-0535 Impact factor: 2.367
Primers used in detecting single nucleotide polymorphism in chemokine genes.
| SNP | Chromosome | Identity | Primer (5'-3') | Product size (bp) |
| MCP-1 -2518A/G | 17q11.2-q12 | rs1024611 | F: AAGTGGGAGGCAGACAGCTA/G | 252 |
| R: CTGATAAAGCCACAATCCAGAG | ||||
| RANTES -403G/A | 17q11.2-q12 | rs2107538 | F: CATGGATGAGGGAAAGGAGG/A | 285 |
| R: GAGTCTCTGTCTCTCCCTCA | ||||
| RANTES -28C/G | 17q11.2-q12 | rs2280788 | F: GCCCTTTATAGGGCCAGTTG/C | 314 |
| R: GTCCTAACTGCCACTCCTTG | ||||
| CCR2 V64I | 3p21 | rs1799864 | F: TTTTTGCAGTTTATTAAGATGAGGAC/T | 808 |
| R: GAAGGCAGAAGGTGAATAGTTC | ||||
| CCR5 -59029G/A | 3p21 | rs2040388 | F: ACTTCACATTAACCCTGTGC/T | 712 |
| R: ACTGTCATTCAGCCCAATACC | ||||
| CCR5 32 bp deletion | 3p21 | F: GCTCTCATTTTCCATACAGTCAG/A | 827/808 | |
| R: TATACATAAGGAACTTTCGGAGTG |
The single nucleotide polymorphism (SNPs) were detected in 141 patients and 282 controls by sequence specific primers polymerase chain reaction (SSP-PCR) method. SSP-PCR utilizes SSPs with 3'-end mismatches and identifies the presence of specific allelic variants through PCR amplification.
Demographic and clinical details of the 141 patients.
| Follow up in years | Mean=6.8 | Range=(1.5-42.6) |
| Sex | Males=59 | Females=82 |
| Laterality of disease | Bilateral=118 | Unilateral=23 |
| Age of onset (years) | Mean=37.82 | Range=(5-70.5) |
| Recurrence (rate per year) | Mean=1.92 | Range=(1-7) |
| MeanVisual impairment during inflammation | Mean=6/12 | Range=(6/5-PL) |
| Best corrected vision after 18 months | Mean=6/9 | Range=(6/5-HM) |
| Permanent visual loss | n=55 | Mean=6/24, Range=6/12-HM |
| More than 10 mg of steroids for long term | n=51 | |
| On second line of immuno-suppressants | n=51 | |
| Cystoid macular edema | n=85 | |
| Raised intra-ocular pressure | n=46 | |
| Cataract | n=55 |
141 patients with idiopathic posterior segment uveitis were included in this study. The follow up ranged from 1.5-42.6 years. This table summarizes the clinical details of the patients.
Genotypic frequencies of chemokine single nucleotide polymorphisms in patients and controls.
| Genotype | Patients n=(141) | Controls n=(282) | |
| MCP-1 -2518 A/G | AA | 58.2% | 53.4% |
| AG | 36.9% | 38.5% | |
| GG | 5.0% | 8.1% | |
| RANTES -403 G/A | GG | 61.0% | 63.3% |
| GA | 34.8% | 31.8% | |
| AA | 4.3% | 4.9% | |
| RANTES -28 C/G | CC | 94.3% | 94.3% |
| CG | 5.7% | 5.3% | |
| GG | 0.0% | 0.4% | |
| CCR2 V64I | VV | 82.3% | 87.2% |
| VI | 16.3% | 12.5% | |
| II | 1.4% | 0.4% | |
| CCR5 -59029 G/A | GG | 21.3% | 22.3% |
| GA | 44.7% | 48.6% | |
| AA | 34.0% | 29.1% | |
| CCR2 32 bp deletion | wt/wt | 77.3% | 76.6% |
| wt/del | 20.6% | 21.6% | |
| del/del | 2.1% | 1.8% | |
The genotypic frequencies of the six polymorphisms were compared between patients and controls. The frequencies are shown in percentage and as seen in the table there are no significant differences between the genotypic frequencies of patients and controls.
Allelic frequencies of chemokine single nucleotide polymorphisms in major subgroups of idiopathic posterior segment uveitis.
| Genotype | Intermediate uveitis n=(77) | Pan uveitis n=(17) | Posterior uveitis n=(29) | Vasculitis n=(18) | Grand total n=(141) | |
| MCP-1 -2518 A/G | AA | 53% | 71% | 69% | 50% | 58% |
| AG | 43% | 18% | 28% | 44% | 37% | |
| GG | 4% | 12% | 3% | 6% | 5% | |
| RANTES -403 G/A | GG | 58% | 71% | 59% | 67% | 61% |
| GA | 40% | 24% | 31% | 28% | 35% | |
| AA | 1% | 6% | 10% | 6% | 4% | |
| RANTES -28 C/G | CC | 95% | 88% | 93% | 100% | 94% |
| CG | 5% | 12% | 7% | 0% | 6% | |
| CCR2 V64I | VV | 79% | 76% | 93% | 83% | 82% |
| VI | 18% | 24% | 7% | 17% | 16% | |
| II | 3% | 0% | 0% | 0% | 1% | |
| CCR5 -59029 G/A | GG | 25% | 6% | 17% | 28% | 21% |
| GA | 40% | 47% | 66% | 28% | 45% | |
| AA | 35% | 47% | 17% | 44% | 34% | |
| CCR5 32 bp deletion | wt/wt | 81% | 76% | 72% | 72% | 77% |
| wt/del | 17% | 18% | 28% | 28% | 21% | |
| del/del | 3% | 6% | 0% | 0% | 2% | |
Idiopathic posterior segment uveitis was divided into four types on the basis of site of inflammation. Subgroup analysis did not reveal any association of chemokine SNPs with any phenotype of uveitis apart from CCR2 64I allele, which was slightly higher in patients with intermediate uveitis (12%) when compared to the controls (7%; p=0.03, pc=0.09). The genotypic frequencies are shown in percentages.
Comparison of mean visual acuities between RANTES -403 GG and RANTES -403 GA/AA over a ten-year period.
| Genotype | Mean VA at year 1 | Mean VA at year 2 | Mean VA at year 3 | Mean VA at year 5 | Mean VA at year 10 |
| RANTES GG | 0.5103 | 0.4824 | 0.4817 | 0.4155 | 0.3844 |
| RANTES GA/AA | 0.7140 | 0.6783 | 0.6726 | 0.6213 | 0.5422 |
| P value (2-tailed) | 0.002 | 0.013 | 0.016 | 0.026 | 0.056 |
The G allele of RANTES -403 SNP was significantly associated with worst visual acuity in the affected eye. As shown in this table patients with the GG genotype had a worse mean visual acuity as compared to carriers of the A allele. The difference was greater in early years but even after 10 years of onset of disease the patients with A allele carriage had better mean visual acuity.
Summary of significant associations between the chemokine polymorphisms and idiopathic posterior segment uveitis.
| Phenotype | Genotype | p value | |
| MCP-1 -2518 AA n=82 | MCP-1 -2518 AG & GG n=59 | ||
| Mean age of onset of *IPSU | 41 years | 33 years | pc=0.003 |
| RANTES -403GG n=86 | RANTES -403 GA & AA n=55 | ||
| Severe inflammatory episodes | 38% (33) | 20% (11) | pc=0.04 |
| CCR5 wt/wt n=109 | CCR5 del/wt & del/del n=32 | ||
| Meanv Visual acuity after 18 months | 6/9 | 6/6 | pc=0.028 |
| CCR2 VV n=116 | CCR2 VI & II n=25 | ||
| Meanv Visual acuity after 18 months | 6/9 | 6/15 | pc=0.04 |
| Raised intra-ocular pressure | 27% (31) | 60% (15) | pc=0.007 |
| CCR5 -59029 GG n=30 | CCR5 -59029 GA & AA n=111 | ||
| On long term corticosteroid treatment | 20% (6) | 40% (44) | pc=0.051 |
This table shows the effect of chemokine SNPs on the phenotype of idiopathic posterior segment uveitis. Logistic regression model was used to perform the statistical calculations. Results show that chemokine SNPs can affect the phenotype of idiopathic posterior segment uveitis and can be predictors of severity and complications. Asterisk indicates idiopathic posterior segment uveitis.