Literature DB >> 26687054

A nonequilibrium power balance relation for analyzing dissipative filament dynamics.

Falko Ziebert1,2, Hervé Mohrbach3,4, Igor M Kulić5.   

Abstract

Biofilaments like F-actin or microtubules, as well as cilia, flagella, or filament bundles, are often deformed by distributed and time-dependent external forces. It is highly desirable to characterize these filaments' mechanics in an efficient way, either using a single experiment or a high throughput method. We here propose a dynamic power balance approach to study nonequilibrium filament dynamics and exemplify it both experimentally and theoretically by applying it to microtubule gliding assay dynamics. Its usefulness is highlighted by the experimental determination of the lateral friction coefficient for microtubules on kinesins. In contrast to what is usually assumed, friction is anisotropic, in a similar fashion as hydrodynamic friction. We also exemplify, by considering a microtubule buckling event, that if at least one parameter is known in advance, all other parameters can be determined by analyzing a single time-dependent experiment.

Keywords:  Living systems: Cellular Processes

Mesh:

Year:  2015        PMID: 26687054     DOI: 10.1140/epje/i2015-15129-9

Source DB:  PubMed          Journal:  Eur Phys J E Soft Matter        ISSN: 1292-8941            Impact factor:   1.890


  43 in total

1.  Single kinesin molecules studied with a molecular force clamp.

Authors:  K Visscher; M J Schnitzer; S M Block
Journal:  Nature       Date:  1999-07-08       Impact factor: 49.962

2.  A dynamical model of kinesin-microtubule motility assays.

Authors:  F Gibbons; J F Chauwin; M Despósito; J V José
Journal:  Biophys J       Date:  2001-06       Impact factor: 4.033

3.  Motor driven microtubule shape fluctuations: force from within the lattice.

Authors:  Hervé Mohrbach; Igor M Kulić
Journal:  Phys Rev Lett       Date:  2007-11-21       Impact factor: 9.161

4.  Tubulin bistability and polymorphic dynamics of microtubules.

Authors:  Hervé Mohrbach; Albert Johner; Igor M Kulić
Journal:  Phys Rev Lett       Date:  2010-12-28       Impact factor: 9.161

5.  Directional loading of the kinesin motor molecule as it buckles a microtubule.

Authors:  F Gittes; E Meyhöfer; S Baek; J Howard
Journal:  Biophys J       Date:  1996-01       Impact factor: 4.033

6.  Bacteria swim by rotating their flagellar filaments.

Authors:  H C Berg; R A Anderson
Journal:  Nature       Date:  1973-10-19       Impact factor: 49.962

7.  Fluctuation in the microtubule sliding movement driven by kinesin in vitro.

Authors:  Y Imafuku; Y Y Toyoshima; K Tawada
Journal:  Biophys J       Date:  1996-02       Impact factor: 4.033

8.  Acting on actin: the electric motility assay.

Authors:  D Riveline; A Ott; F Jülicher; D A Winkelmann; O Cardoso; J J Lacapère; S Magnúsdóttir; J L Viovy; L Gorre-Talini; J Prost
Journal:  Eur Biophys J       Date:  1998       Impact factor: 1.733

9.  Critical motor number for fractional steps of cytoskeletal filaments in gliding assays.

Authors:  Xin Li; Reinhard Lipowsky; Jan Kierfeld
Journal:  PLoS One       Date:  2012-08-21       Impact factor: 3.240

10.  Flexural rigidity of microtubules measured with the use of optical tweezers.

Authors:  H Felgner; R Frank; M Schliwa
Journal:  J Cell Sci       Date:  1996-02       Impact factor: 5.285

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  2 in total

1.  Label-free Imaging and Bending Analysis of Microtubules by ROCS Microscopy and Optical Trapping.

Authors:  Matthias D Koch; Alexander Rohrbach
Journal:  Biophys J       Date:  2018-01-09       Impact factor: 4.033

2.  Single microtubules and small networks become significantly stiffer on short time-scales upon mechanical stimulation.

Authors:  Matthias D Koch; Natalie Schneider; Peter Nick; Alexander Rohrbach
Journal:  Sci Rep       Date:  2017-06-26       Impact factor: 4.379

  2 in total

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