Literature DB >> 17403777

Two small regulatory RNAs establish opposing fates of a developmental axis.

Fabio T S Nogueira1, Shahinez Madi, Daniel H Chitwood, Michelle T Juarez, Marja C P Timmermans.   

Abstract

Small RNAs are important regulators of gene expression. In maize, adaxial/abaxial (dorsoventral) leaf polarity is established by an abaxial gradient of microRNA166 (miR166), which spatially restricts the expression domain of class III homeodomain leucine zipper (HD-ZIPIII) transcription factors that specify adaxial/upper fate. Here, we show that leafbladeless1 encodes a key component in the trans-acting small interfering RNA (ta-siRNA) biogenesis pathway that acts on the adaxial side of developing leaves and demarcates the domains of hd-zipIII and miR166 accumulation. Our findings indicate that tasiR-ARF, a ta-siRNA, and miR166 establish opposing domains along the adaxial-abaxial axis, thus revealing a novel mechanism of pattern formation.

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Year:  2007        PMID: 17403777      PMCID: PMC1838527          DOI: 10.1101/gad.1528607

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  30 in total

1.  Radial patterning of Arabidopsis shoots by class III HD-ZIP and KANADI genes.

Authors:  John F Emery; Sandra K Floyd; John Alvarez; Yuval Eshed; Nathaniel P Hawker; Anat Izhaki; Stuart F Baum; John L Bowman
Journal:  Curr Biol       Date:  2003-10-14       Impact factor: 10.834

Review 2.  MicroRNAs: genomics, biogenesis, mechanism, and function.

Authors:  David P Bartel
Journal:  Cell       Date:  2004-01-23       Impact factor: 41.582

3.  Endogenous trans-acting siRNAs regulate the accumulation of Arabidopsis mRNAs.

Authors:  Franck Vazquez; Hervé Vaucheret; Ramya Rajagopalan; Christelle Lepers; Virginie Gasciolli; Allison C Mallory; Jean-Louis Hilbert; David P Bartel; Patrice Crété
Journal:  Mol Cell       Date:  2004-10-08       Impact factor: 17.970

4.  Arabidopsis SGS2 and SGS3 genes are required for posttranscriptional gene silencing and natural virus resistance.

Authors:  P Mourrain; C Béclin; T Elmayan; F Feuerbach; C Godon; J B Morel; D Jouette; A M Lacombe; S Nikic; N Picault; K Rémoué; M Sanial; T A Vo; H Vaucheret
Journal:  Cell       Date:  2000-05-26       Impact factor: 41.582

5.  MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant.

Authors:  Cheng Lu; Karthik Kulkarni; Frédéric F Souret; Ramesh MuthuValliappan; Shivakundan Singh Tej; R Scott Poethig; Ian R Henderson; Steven E Jacobsen; Wenzhong Wang; Pamela J Green; Blake C Meyers
Journal:  Genome Res       Date:  2006-09-05       Impact factor: 9.043

6.  Ectopic expression of the knox homeo box gene rough sheath1 alters cell fate in the maize leaf.

Authors:  R G Schneeberger; P W Becraft; S Hake; M Freeling
Journal:  Genes Dev       Date:  1995-09-15       Impact factor: 11.361

7.  Specification of adaxial cell fate during maize leaf development.

Authors:  Michelle T Juarez; Richard W Twigg; Marja C P Timmermans
Journal:  Development       Date:  2004-09       Impact factor: 6.868

8.  SGS3 and SGS2/SDE1/RDR6 are required for juvenile development and the production of trans-acting siRNAs in Arabidopsis.

Authors:  Angela Peragine; Manabu Yoshikawa; Gang Wu; Heidi L Albrecht; R Scott Poethig
Journal:  Genes Dev       Date:  2004-10-01       Impact factor: 11.361

9.  Spatially restricted microRNA directs leaf polarity through ARGONAUTE1.

Authors:  Catherine A Kidner; Robert A Martienssen
Journal:  Nature       Date:  2004-03-04       Impact factor: 49.962

10.  microRNA-mediated repression of rolled leaf1 specifies maize leaf polarity.

Authors:  Michelle T Juarez; Jonathan S Kui; Julie Thomas; Bradley A Heller; Marja C P Timmermans
Journal:  Nature       Date:  2004-03-04       Impact factor: 49.962

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  94 in total

1.  ragged seedling2 Encodes an ARGONAUTE7-like protein required for mediolateral expansion, but not dorsiventrality, of maize leaves.

Authors:  Ryan N Douglas; Dan Wiley; Ananda Sarkar; Nathan Springer; Marja C P Timmermans; Michael J Scanlon
Journal:  Plant Cell       Date:  2010-05-07       Impact factor: 11.277

2.  In situ localization of small RNAs in plants by using LNA probes.

Authors:  Marie Javelle; Marja C P Timmermans
Journal:  Nat Protoc       Date:  2012-02-23       Impact factor: 13.491

3.  Cytoplasmic Arabidopsis AGO7 accumulates in membrane-associated siRNA bodies and is required for ta-siRNA biogenesis.

Authors:  Virginie Jouannet; Ana Beatriz Moreno; Taline Elmayan; Hervé Vaucheret; Martin D Crespi; Alexis Maizel
Journal:  EMBO J       Date:  2012-02-10       Impact factor: 11.598

Review 4.  How a plant builds leaves.

Authors:  Siobhan A Braybrook; Cris Kuhlemeier
Journal:  Plant Cell       Date:  2010-04-27       Impact factor: 11.277

5.  Epigenetic reprogramming during vegetative phase change in maize.

Authors:  Hong Li; Michael Freeling; Damon Lisch
Journal:  Proc Natl Acad Sci U S A       Date:  2010-12-06       Impact factor: 11.205

6.  The Functions of RNA-Dependent RNA Polymerases in Arabidopsis.

Authors:  Matthew R Willmann; Matthew W Endres; Rebecca T Cook; Brian D Gregory
Journal:  Arabidopsis Book       Date:  2011-07-31

Review 7.  Conservation and evolution of miRNA regulatory programs in plant development.

Authors:  Matthew R Willmann; R Scott Poethig
Journal:  Curr Opin Plant Biol       Date:  2007-08-20       Impact factor: 7.834

8.  Pattern formation via small RNA mobility.

Authors:  Daniel H Chitwood; Fabio T S Nogueira; Miya D Howell; Taiowa A Montgomery; James C Carrington; Marja C P Timmermans
Journal:  Genes Dev       Date:  2009-03-01       Impact factor: 11.361

9.  A model for the 26S proteasome and ribosome actions in leaf polarity formation.

Authors:  Qihua Ling; Yao Yao; Hai Huang
Journal:  Plant Signal Behav       Date:  2008-10

10.  The REDUCED LEAFLET genes encode key components of the trans-acting small interfering RNA pathway and regulate compound leaf and flower development in Lotus japonicus.

Authors:  Jun Yan; Xuefei Cai; Jianghong Luo; Shusei Sato; Qunyi Jiang; Jun Yang; Xiangling Cao; Xiaohe Hu; Satoshi Tabata; Peter M Gresshoff; Da Luo
Journal:  Plant Physiol       Date:  2009-12-02       Impact factor: 8.340

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