Literature DB >> 19270155

Pattern formation via small RNA mobility.

Daniel H Chitwood1, Fabio T S Nogueira, Miya D Howell, Taiowa A Montgomery, James C Carrington, Marja C P Timmermans.   

Abstract

MicroRNAs and trans-acting siRNAs (ta-siRNAs) have important regulatory roles in development. Unlike other developmentally important regulatory molecules, small RNAs are not known to act as mobile signals during development. Here, we show that low-abundant, conserved ta-siRNAs, termed tasiR-ARFs, move intercellularly from their defined source of biogenesis on the upper (adaxial) side of leaves to the lower (abaxial) side to create a gradient of small RNAs that patterns the abaxial determinant AUXIN RESPONSE FACTOR3. Our observations have important ramifications for the function of small RNAs and suggest they can serve as mobile, instructive signals during development.

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Year:  2009        PMID: 19270155      PMCID: PMC2658522          DOI: 10.1101/gad.1770009

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  28 in total

1.  A gateway cloning vector set for high-throughput functional analysis of genes in planta.

Authors:  Mark D Curtis; Ueli Grossniklaus
Journal:  Plant Physiol       Date:  2003-10       Impact factor: 8.340

2.  Endogenous trans-acting siRNAs regulate the accumulation of Arabidopsis mRNAs.

Authors:  Franck Vazquez; Hervé Vaucheret; Ramya Rajagopalan; Christelle Lepers; Virginie Gasciolli; Allison C Mallory; Jean-Louis Hilbert; David P Bartel; Patrice Crété
Journal:  Mol Cell       Date:  2004-10-08       Impact factor: 17.970

Review 3.  Non-cell autonomous RNA silencing.

Authors:  Olivier Voinnet
Journal:  FEBS Lett       Date:  2005-09-30       Impact factor: 4.124

4.  microRNA-directed phasing during trans-acting siRNA biogenesis in plants.

Authors:  Edwards Allen; Zhixin Xie; Adam M Gustafson; James C Carrington
Journal:  Cell       Date:  2005-04-22       Impact factor: 41.582

5.  MicroRNA expression in zebrafish embryonic development.

Authors:  Erno Wienholds; Wigard P Kloosterman; Eric Miska; Ezequiel Alvarez-Saavedra; Eugene Berezikov; Ewart de Bruijn; H Robert Horvitz; Sakari Kauppinen; Ronald H A Plasterk
Journal:  Science       Date:  2005-05-26       Impact factor: 47.728

6.  SERRATE coordinates shoot meristem function and leaf axial patterning in Arabidopsis.

Authors:  Stephen P Grigg; Claudia Canales; Angela Hay; Miltos Tsiantis
Journal:  Nature       Date:  2005-10-13       Impact factor: 49.962

7.  In vivo investigation of the transcription, processing, endonucleolytic activity, and functional relevance of the spatial distribution of a plant miRNA.

Authors:  Eneida Abreu Parizotto; Patrice Dunoyer; Nadia Rahm; Christophe Himber; Olivier Voinnet
Journal:  Genes Dev       Date:  2004-09-01       Impact factor: 11.361

8.  SGS3 and SGS2/SDE1/RDR6 are required for juvenile development and the production of trans-acting siRNAs in Arabidopsis.

Authors:  Angela Peragine; Manabu Yoshikawa; Gang Wu; Heidi L Albrecht; R Scott Poethig
Journal:  Genes Dev       Date:  2004-10-01       Impact factor: 11.361

9.  The PINHEAD/ZWILLE gene acts pleiotropically in Arabidopsis development and has overlapping functions with the ARGONAUTE1 gene.

Authors:  K Lynn; A Fernandez; M Aida; J Sedbrook; M Tasaka; P Masson; M K Barton
Journal:  Development       Date:  1999-02       Impact factor: 6.868

10.  Regulation of small RNA accumulation in the maize shoot apex.

Authors:  Fabio T S Nogueira; Daniel H Chitwood; Shahinez Madi; Kazuhiro Ohtsu; Patrick S Schnable; Michael J Scanlon; Marja C P Timmermans
Journal:  PLoS Genet       Date:  2009-01-02       Impact factor: 5.917

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  145 in total

1.  ragged seedling2 Encodes an ARGONAUTE7-like protein required for mediolateral expansion, but not dorsiventrality, of maize leaves.

Authors:  Ryan N Douglas; Dan Wiley; Ananda Sarkar; Nathan Springer; Marja C P Timmermans; Michael J Scanlon
Journal:  Plant Cell       Date:  2010-05-07       Impact factor: 11.277

2.  A microRNA superfamily regulates nucleotide binding site-leucine-rich repeats and other mRNAs.

Authors:  Padubidri V Shivaprasad; Ho-Ming Chen; Kanu Patel; Donna M Bond; Bruno A C M Santos; David C Baulcombe
Journal:  Plant Cell       Date:  2012-03-09       Impact factor: 11.277

3.  In situ localization of small RNAs in plants by using LNA probes.

Authors:  Marie Javelle; Marja C P Timmermans
Journal:  Nat Protoc       Date:  2012-02-23       Impact factor: 13.491

4.  Cytoplasmic Arabidopsis AGO7 accumulates in membrane-associated siRNA bodies and is required for ta-siRNA biogenesis.

Authors:  Virginie Jouannet; Ana Beatriz Moreno; Taline Elmayan; Hervé Vaucheret; Martin D Crespi; Alexis Maizel
Journal:  EMBO J       Date:  2012-02-10       Impact factor: 11.598

5.  Transgenerational response to stress in Arabidopsis thaliana.

Authors:  Alex Boyko; Igor Kovalchuk
Journal:  Plant Signal Behav       Date:  2010-08-01

6.  Putative Arabidopsis THO/TREX mRNA export complex is involved in transgene and endogenous siRNA biosynthesis.

Authors:  Nataliya E Yelina; Lisa M Smith; Alexandra M E Jones; Kanu Patel; Krystyna A Kelly; David C Baulcombe
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-15       Impact factor: 11.205

7.  22-Nucleotide RNAs trigger secondary siRNA biogenesis in plants.

Authors:  Ho-Ming Chen; Li-Teh Chen; Kanu Patel; Yi-Hang Li; David C Baulcombe; Shu-Hsing Wu
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-19       Impact factor: 11.205

Review 8.  How a plant builds leaves.

Authors:  Siobhan A Braybrook; Cris Kuhlemeier
Journal:  Plant Cell       Date:  2010-04-27       Impact factor: 11.277

9.  An endogenous, systemic RNAi pathway in plants.

Authors:  Patrice Dunoyer; Christopher A Brosnan; Gregory Schott; Yu Wang; Florence Jay; Abdelmalek Alioua; Christophe Himber; Olivier Voinnet
Journal:  EMBO J       Date:  2010-04-22       Impact factor: 11.598

10.  Developmental biology: Roots respond to an inner calling.

Authors:  Ben Scheres
Journal:  Nature       Date:  2010-05-20       Impact factor: 49.962

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