Literature DB >> 17379337

Engineering productive enzyme confinement.

A Keith Dunker1, Ariel Fernández.   

Abstract

Natural enzymes were selected to function inside the cell, not in the test tube; therefore, their performance is optimized for the crowded conditions encountered in vivo. Most man-made matrices for enzyme confinement lead to suboptimal catalytic activity. Ackerman and colleagues showed that an entrapping environment consisting of functionalized mesoporous silica actually enhances enzyme activity beyond the test-tube levels of free enzymes in solution. These findings provide an approach for dissecting the effect of various contributors to enzyme activity and thereby provide a means for fine-tuning the entrapping matrices to optimize enzyme performance in a rational way.

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Year:  2007        PMID: 17379337      PMCID: PMC1933498          DOI: 10.1016/j.tibtech.2007.03.009

Source DB:  PubMed          Journal:  Trends Biotechnol        ISSN: 0167-7799            Impact factor:   19.536


  8 in total

Review 1.  The influence of macromolecular crowding and macromolecular confinement on biochemical reactions in physiological media.

Authors:  A P Minton
Journal:  J Biol Chem       Date:  2001-02-15       Impact factor: 5.157

2.  Effects of macromolecular crowding on protein folding and aggregation.

Authors:  B van den Berg; R J Ellis; C M Dobson
Journal:  EMBO J       Date:  1999-12-15       Impact factor: 11.598

3.  Macromolecular crowding perturbs protein refolding kinetics: implications for folding inside the cell.

Authors:  B van den Berg; R Wain; C M Dobson; R J Ellis
Journal:  EMBO J       Date:  2000-08-01       Impact factor: 11.598

4.  Effects of macromolecular crowding on the intrinsically disordered proteins c-Fos and p27(Kip1).

Authors:  S L Flaugh; K J Lumb
Journal:  Biomacromolecules       Date:  2001       Impact factor: 6.988

5.  Entrapping enzyme in a functionalized nanoporous support.

Authors:  Chenghong Lei; Yongsoon Shin; Jun Liu; Eric J Ackerman
Journal:  J Am Chem Soc       Date:  2002-09-25       Impact factor: 15.419

6.  Immobilization of lysozyme onto pore-engineered mesoporous AISBA-15.

Authors:  Masahiko Miyahara; Ajayan Vinu; Katsuhiko Ariga
Journal:  J Nanosci Nanotechnol       Date:  2006-06

7.  Macromolecular crowding in the Escherichia coli periplasm maintains alpha-synuclein disorder.

Authors:  Brian C McNulty; Gregory B Young; Gary J Pielak
Journal:  J Mol Biol       Date:  2005-12-01       Impact factor: 5.469

8.  Characterization of functionalized nanoporous supports for protein confinement.

Authors:  Chenghong Lei; Yongsoon Shin; Jon K Magnuson; Glen Fryxell; Linda L Lasure; Douglas C Elliott; Jun Liu; Eric J Ackerman
Journal:  Nanotechnology       Date:  2006-10-25       Impact factor: 3.874

  8 in total
  5 in total

1.  Favourable influence of hydrophobic surfaces on protein structure in porous organically-modified silica glasses.

Authors:  Bouzid Menaa; Mar Herrero; Vicente Rives; Mayya Lavrenko; Daryl K Eggers
Journal:  Biomaterials       Date:  2008-03-24       Impact factor: 12.479

2.  In vitro release of organophosphorus acid anhydrolase from functionalized mesoporous silica against nerve agents.

Authors:  Baowei Chen; Saumil S Shah; Yongsoon Shin; Chenghong Lei; Jun Liu
Journal:  Anal Biochem       Date:  2011-10-02       Impact factor: 3.365

3.  Probing mechanisms for enzymatic activity enhancement of organophosphorus hydrolase in functionalized mesoporous silica.

Authors:  Baowei Chen; Chenghong Lei; Yongsoon Shin; Jun Liu
Journal:  Biochem Biophys Res Commun       Date:  2009-10-27       Impact factor: 3.575

Review 4.  Recent Strategies and Applications for l-Asparaginase Confinement.

Authors:  João C F Nunes; Raquel O Cristóvão; Mara G Freire; Valéria C Santos-Ebinuma; Joaquim L Faria; Cláudia G Silva; Ana P M Tavares
Journal:  Molecules       Date:  2020-12-10       Impact factor: 4.411

5.  Combined Spectroscopic and Calorimetric Studies to Reveal Absorption Mechanisms and Conformational Changes of Protein on Nanoporous Biomaterials.

Authors:  Saharnaz Ahmadi; Maryam Farokhi; Parisa Padidar; Mojtaba Falahati
Journal:  Int J Mol Sci       Date:  2015-07-29       Impact factor: 5.923

  5 in total

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