Literature DB >> 10921869

Macromolecular crowding perturbs protein refolding kinetics: implications for folding inside the cell.

B van den Berg1, R Wain, C M Dobson, R J Ellis.   

Abstract

We have studied the effects of macromolecular crowding on protein folding kinetics by studying the oxidative refolding of hen lysozyme in the absence and presence of high concentrations of bovine serum albumin and Ficoll 70. The heterogeneity characteristic of the lysozyme refolding process is preserved under crowded conditions. This, together with the observation that the refolding intermediates that accumulate to significant levels are very similar in the absence and presence of Ficoll, suggests that crowding does not alter substantially the energetics of the protein folding reaction. However, the presence of high concentrations of macromolecules results in the acceleration of the fast track of the refolding process whereas the slow track is substantially retarded. The results can be explained by preferential excluded volume stabilization of compact states relative to more unfolded states, and suggest that, relative to dilute solutions, the rates of many protein folding processes are likely to be altered under conditions that more closely resemble the intracellular environment.

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Year:  2000        PMID: 10921869      PMCID: PMC306593          DOI: 10.1093/emboj/19.15.3870

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  24 in total

1.  Crowding effects on EcoRV kinetics and binding.

Authors:  J R Wenner; V A Bloomfield
Journal:  Biophys J       Date:  1999-12       Impact factor: 4.033

2.  The oxidative refolding of hen lysozyme and its catalysis by protein disulfide isomerase.

Authors:  B van den Berg; E W Chung; C V Robinson; P L Mateo; C M Dobson
Journal:  EMBO J       Date:  1999-09-01       Impact factor: 11.598

3.  Effects of macromolecular crowding on protein folding and aggregation.

Authors:  B van den Berg; R J Ellis; C M Dobson
Journal:  EMBO J       Date:  1999-12-15       Impact factor: 11.598

4.  Protein folding: Thickening the broth.

Authors:  A P Minton
Journal:  Curr Biol       Date:  2000-02-10       Impact factor: 10.834

Review 5.  Implications of macromolecular crowding for protein assembly.

Authors:  A P Minton
Journal:  Curr Opin Struct Biol       Date:  2000-02       Impact factor: 6.809

6.  Comparison of the kinetics of S-S bond, secondary structure, and active site formation during refolding of reduced denatured hen egg white lysozyme.

Authors:  P Roux; M Ruoppolo; A F Chaffotte; M E Goldberg
Journal:  Protein Sci       Date:  1999-12       Impact factor: 6.725

7.  Effect of a concentrated "inert" macromolecular cosolute on the stability of a globular protein with respect to denaturation by heat and by chaotropes: a statistical-thermodynamic model.

Authors:  A P Minton
Journal:  Biophys J       Date:  2000-01       Impact factor: 4.033

Review 8.  The fundamentals of protein folding: bringing together theory and experiment.

Authors:  C M Dobson; M Karplus
Journal:  Curr Opin Struct Biol       Date:  1999-02       Impact factor: 6.809

9.  Protein mobility in the cytoplasm of Escherichia coli.

Authors:  M B Elowitz; M G Surette; P E Wolf; J B Stock; S Leibler
Journal:  J Bacteriol       Date:  1999-01       Impact factor: 3.490

10.  Characterisation of the dominant oxidative folding intermediate of hen lysozyme.

Authors:  B van den Berg; E W Chung; C V Robinson; C M Dobson
Journal:  J Mol Biol       Date:  1999-07-16       Impact factor: 5.469

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  68 in total

1.  Molecular confinement influences protein structure and enhances thermal protein stability.

Authors:  D K Eggers; J S Valentine
Journal:  Protein Sci       Date:  2001-02       Impact factor: 6.725

2.  Structure, function, and folding of phosphoglycerate kinase are strongly perturbed by macromolecular crowding.

Authors:  Apratim Dhar; Antonios Samiotakis; Simon Ebbinghaus; Lea Nienhaus; Dirar Homouz; Martin Gruebele; Margaret S Cheung
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-04       Impact factor: 11.205

3.  Competition between protein folding and aggregation with molecular chaperones in crowded solutions: insight from mesoscopic simulations.

Authors:  Akira R Kinjo; Shoji Takada
Journal:  Biophys J       Date:  2003-12       Impact factor: 4.033

4.  Life in a crowded world.

Authors:  Germán Rivas; Frank Ferrone; Judith Herzfeld
Journal:  EMBO Rep       Date:  2004-01       Impact factor: 8.807

5.  Serum albumin prevents protein aggregation and amyloid formation and retains chaperone-like activity in the presence of physiological ligands.

Authors:  Thomas E Finn; Andrea C Nunez; Margaret Sunde; Simon B Easterbrook-Smith
Journal:  J Biol Chem       Date:  2012-05-01       Impact factor: 5.157

6.  Temperature dependence of protein folding kinetics in living cells.

Authors:  Minghao Guo; Yangfan Xu; Martin Gruebele
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-04       Impact factor: 11.205

7.  Competition between folding and aggregation in a model for protein solutions.

Authors:  M Maiti; M Rao; S Sastry
Journal:  Eur Phys J E Soft Matter       Date:  2010-06-22       Impact factor: 1.890

8.  Molecular crowding enhances native state stability and refolding rates of globular proteins.

Authors:  Margaret S Cheung; Dmitri Klimov; D Thirumalai
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-21       Impact factor: 11.205

9.  Residue-level interrogation of macromolecular crowding effects on protein stability.

Authors:  Lisa M Charlton; Christopher O Barnes; Conggang Li; Jillian Orans; Gregory B Young; Gary J Pielak
Journal:  J Am Chem Soc       Date:  2008-05-07       Impact factor: 15.419

10.  Guiding protein aggregation with macromolecular crowding.

Authors:  Larissa A Munishkina; Atta Ahmad; Anthony L Fink; Vladimir N Uversky
Journal:  Biochemistry       Date:  2008-07-30       Impact factor: 3.162

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