Literature DB >> 17376719

Imaging mRNA movement from transcription sites to translation sites.

Alexis J Rodriguez1, John Condeelis, Robert H Singer, Jason B Dictenberg.   

Abstract

RNA localization is one mechanism to temporally and spatially restrict protein synthesis to specific subcellular compartments in response to extracellular stimuli. To understand the mechanisms of mRNA localization, a number of methods have been developed to follow the path of these molecules in living cells including direct labeling of target mRNAs, the MS2-GFP system, and molecular beacons. We review advances in these methods with the goal of identifying the particular strengths and weaknesses of the various approaches in their ability to follow the movements of mRNAs from transcription sites to translation sites.

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Year:  2007        PMID: 17376719      PMCID: PMC4956988          DOI: 10.1016/j.semcdb.2007.02.002

Source DB:  PubMed          Journal:  Semin Cell Dev Biol        ISSN: 1084-9521            Impact factor:   7.727


  33 in total

1.  Facilitation of dendritic mRNA transport by CPEB.

Authors:  Yi-Shuian Huang; John H Carson; Elisa Barbarese; Joel D Richter
Journal:  Genes Dev       Date:  2003-03-01       Impact factor: 11.361

2.  Visualizing the distribution and transport of mRNAs in living cells.

Authors:  Diana P Bratu; Byeong-Jik Cha; Musa M Mhlanga; Fred Russell Kramer; Sanjay Tyagi
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-28       Impact factor: 11.205

3.  Intracellular RNA sorting, transport and localization.

Authors:  Ralf-Peter Jansen; Michael Kiebler
Journal:  Nat Struct Mol Biol       Date:  2005-10       Impact factor: 15.369

4.  Movement of eukaryotic mRNAs between polysomes and cytoplasmic processing bodies.

Authors:  Muriel Brengues; Daniela Teixeira; Roy Parker
Journal:  Science       Date:  2005-09-01       Impact factor: 47.728

Review 5.  Nanostructured probes for RNA detection in living cells.

Authors:  Philip Santangelo; Nitin Nitin; Gang Bao
Journal:  Ann Biomed Eng       Date:  2006-02-07       Impact factor: 3.934

6.  CPEB-mediated cytoplasmic polyadenylation and the regulation of experience-dependent translation of alpha-CaMKII mRNA at synapses.

Authors:  L Wu; D Wells; J Tay; D Mendis; M A Abbott; A Barnitt; E Quinlan; A Heynen; J R Fallon; J D Richter
Journal:  Neuron       Date:  1998-11       Impact factor: 17.173

7.  CBP80 promotes interaction of Upf1 with Upf2 during nonsense-mediated mRNA decay in mammalian cells.

Authors:  Nao Hosoda; Yoon Ki Kim; Fabrice Lejeune; Lynne E Maquat
Journal:  Nat Struct Mol Biol       Date:  2005-09-25       Impact factor: 15.369

8.  The transport of prolamine RNAs to prolamine protein bodies in living rice endosperm cells.

Authors:  Shigeki Hamada; Keiki Ishiyama; Sang-Bong Choi; Changlin Wang; Salvinder Singh; Naoko Kawai; Vincent R Franceschi; Thomas W Okita
Journal:  Plant Cell       Date:  2003-09-24       Impact factor: 11.277

9.  Transcriptional pulsing of a developmental gene.

Authors:  Jonathan R Chubb; Tatjana Trcek; Shailesh M Shenoy; Robert H Singer
Journal:  Curr Biol       Date:  2006-05-23       Impact factor: 10.834

10.  Visualization of mRNA translation in living cells.

Authors:  Alexis J Rodriguez; Shailesh M Shenoy; Robert H Singer; John Condeelis
Journal:  J Cell Biol       Date:  2006-10-09       Impact factor: 10.539

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  20 in total

1.  CORSEN, a new software dedicated to microscope-based 3D distance measurements: mRNA-mitochondria distance, from single-cell to population analyses.

Authors:  Laurent Jourdren; Thierry Delaveau; Emelie Marquenet; Claude Jacq; Mathilde Garcia
Journal:  RNA       Date:  2010-05-21       Impact factor: 4.942

2.  Reining in RNA. Workshop on intracellular RNA localization and localized translation.

Authors:  Patrick C Gilligan; Karuna Sampath
Journal:  EMBO Rep       Date:  2007-12-14       Impact factor: 8.807

3.  Visualizing protein-RNA interactions inside cells by fluorescence resonance energy transfer.

Authors:  Mike Lorenz
Journal:  RNA       Date:  2008-11-25       Impact factor: 4.942

4.  Nonsense codons trigger an RNA partitioning shift.

Authors:  Angela D Bhalla; Jayanthi P Gudikote; Jun Wang; Wai-Kin Chan; Yao-Fu Chang; O Renee Olivas; Miles F Wilkinson
Journal:  J Biol Chem       Date:  2008-12-17       Impact factor: 5.157

Review 5.  Imaging intracellular RNA distribution and dynamics in living cells.

Authors:  Sanjay Tyagi
Journal:  Nat Methods       Date:  2009-05       Impact factor: 28.547

6.  In vivo detection of RNA-binding protein interactions with cognate RNA sequences by fluorescence resonance energy transfer.

Authors:  Martina Huranová; Joseph A Jablonski; Ales Benda; Martin Hof; David Stanek; Massimo Caputi
Journal:  RNA       Date:  2009-09-18       Impact factor: 4.942

7.  A genetic in vivo system to detect asymmetrically distributed RNA.

Authors:  N JayaNandanan; Elizabeth R Gavis; Veit Riechmann; Maria Leptin
Journal:  EMBO Rep       Date:  2011-10-28       Impact factor: 8.807

8.  Fluorescence fluctuation spectroscopy enables quantitative imaging of single mRNAs in living cells.

Authors:  Bin Wu; Jeffrey A Chao; Robert H Singer
Journal:  Biophys J       Date:  2012-06-19       Impact factor: 4.033

Review 9.  Structured non-coding RNAs and the RNP Renaissance.

Authors:  J Robert Hogg; Kathleen Collins
Journal:  Curr Opin Chem Biol       Date:  2008-10-23       Impact factor: 8.822

10.  Sub-cellular trafficking and functionality of 2'-O-methyl and 2'-O-methyl-phosphorothioate molecular beacons.

Authors:  Antony K Chen; Mark A Behlke; Andrew Tsourkas
Journal:  Nucleic Acids Res       Date:  2009-12       Impact factor: 16.971

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