Literature DB >> 17368419

Fluorescence-based analysis of aminoacyl- and peptidyl-tRNA by low-pH sodium dodecyl sulfate-polyacrylamide gel electrophoresis.

Robert N Kirchdoerfer1, Joseph J-T Huang, Molly K Isola, Silvia Cavagnero.   

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Year:  2007        PMID： 17368419      PMCID： PMC2693959          DOI： 10.1016/j.ab.2007.01.019

Source DB:  PubMed          Journal:  Anal Biochem        ISSN： 0003-2697            Impact factor:   3.365


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  12 in total

1.  Ultrasensitive fluorescence-based detection of nascent proteins in gels.

Authors:  S Gite; S Mamaev; J Olejnik; K Rothschild
Journal:  Anal Biochem       Date:  2000-03-15       Impact factor: 3.365

2.  Fluorophores at the N terminus of nascent chloramphenicol acetyltransferase peptides affect translation and movement through the ribosome.

Authors:  V Ramachandiran; C Willms; G Kramer; B Hardesty
Journal:  J Biol Chem       Date:  2000-01-21       Impact factor: 5.157

3.  Tricine-sodium dodecyl sulfate-polyacrylamide gel electrophoresis for the separation of proteins in the range from 1 to 100 kDa.

Authors:  H Schägger; G von Jagow
Journal:  Anal Biochem       Date:  1987-11-01       Impact factor: 3.365

4.  Stability of peptidyl-tRNA - the intermediate of protein synthesis.

Authors:  S Bresler; R Grajevskaja; S Kirilov; E Saminski
Journal:  Biochim Biophys Acta       Date:  1968-02-26

5.  Cleavage of structural proteins during the assembly of the head of bacteriophage T4.

Authors:  U K Laemmli
Journal:  Nature       Date:  1970-08-15       Impact factor: 49.962

6.  A rapid method for isolation of peptidyl tRNA from liver polysomes.

Authors:  F V Plapp; L Tilzer; L C Hayes; M Chiga
Journal:  Anal Biochem       Date:  1975-03       Impact factor: 3.365

7.  Tetramerization of the LexA repressor in solution: implications for gene regulation of the E.coli SOS system at acidic pH.

Authors:  Francisco J R Sousa; Luis M T R Lima; Ana B F Pacheco; Cristiano L P Oliveira; Iris Torriani; Darcy F Almeida; Debora Foguel; Jerson L Silva; Ronaldo Mohana-Borges
Journal:  J Mol Biol       Date:  2006-04-25       Impact factor: 5.469

8.  Regulation of elongation factor G GTPase activity by the ribosomal state. The effects of initiation factors and differentially bound tRNA, aminoacyl-tRNA, and peptidyl-tRNA.

Authors:  J Voigt; K Nagel
Journal:  J Biol Chem       Date:  1993-01-05       Impact factor: 5.157

9.  Dodecyl sulphate/polyacrylamide-gel electrophoresis at low pH values and low temperatures.

Authors:  R Lichtner; H U Wolf
Journal:  Biochem J       Date:  1979-09-01       Impact factor: 3.857

10.  Biosynthesis of type I procollagen. Characterization of the distribution of chain sizes and extent of hydroxylation of polysome-associated pro-alpha-chains.

Authors:  T Z Kirk; J S Evans; A Veis
Journal:  J Biol Chem       Date:  1987-04-25       Impact factor: 5.157
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  10 in total

1.  Cotranslational protein folding within the ribosome tunnel influences trigger-factor recruitment.

Authors:  Ku-Feng Lin; Chia-Sui Sun; Yi-Chen Huang; Sunney I Chan; Jiri Koubek; Tzong-Huah Wu; Joseph J-T Huang
Journal:  Biophys J       Date:  2012-06-19       Impact factor: 4.033

2.  KLR-70: A Novel Cationic Inhibitor of the Bacterial Hsp70 Chaperone.

Authors:  Matthew D Dalphin; Andrew J Stangl; Yue Liu; Silvia Cavagnero
Journal:  Biochemistry       Date:  2020-05-04       Impact factor: 3.162

3.  The plasticity of a translation arrest motif yields insights into nascent polypeptide recognition inside the ribosome tunnel.

Authors:  Mee-Ngan Yap; Harris D Bernstein
Journal:  Mol Cell       Date:  2009-04-24       Impact factor: 17.970

4.  Chain dynamics of nascent polypeptides emerging from the ribosome.

Authors:  Jamie P Ellis; Courtney K Bakke; Robert N Kirchdoerfer; Lisa M Jungbauer; Silvia Cavagnero
Journal:  ACS Chem Biol       Date:  2008-08-22       Impact factor: 5.100

5.  Fluorescence Anisotropy Decays and Microscale-Volume Viscometry Reveal the Compaction of Ribosome-Bound Nascent Proteins.

Authors:  Rachel B Hutchinson; Xi Chen; Ningkun Zhou; Silvia Cavagnero
Journal:  J Phys Chem B       Date:  2021-06-10       Impact factor: 2.991

6.  Nonorthogonal tRNA(cys)(Amber) for protein and nascent chain labeling.

Authors:  Jiří Koubek; Yet-Ran Chen; Richard Ping Cheng; Joseph Jen-Tse Huang
Journal:  RNA       Date:  2015-07-20       Impact factor: 4.942

7.  Nascent chains can form co-translational folding intermediates that promote post-translational folding outcomes in a disease-causing protein.

Authors:  Elena Plessa; Lien P Chu; Sammy H S Chan; Oliver L Thomas; Anaïs M E Cassaignau; Christopher A Waudby; John Christodoulou; Lisa D Cabrita
Journal:  Nat Commun       Date:  2021-11-08       Impact factor: 14.919

8.  An intrinsically disordered nascent protein interacts with specific regions of the ribosomal surface near the exit tunnel.

Authors:  Valeria Guzman-Luna; Andrew M Fuchs; Anna J Allen; Alexios Staikos; Silvia Cavagnero
Journal:  Commun Biol       Date:  2021-10-29

9.  Structural characterization of the interaction of α-synuclein nascent chains with the ribosomal surface and trigger factor.

Authors:  Annika Deckert; Christopher A Waudby; Tomasz Wlodarski; Anne S Wentink; Xiaolin Wang; John P Kirkpatrick; Jack F S Paton; Carlo Camilloni; Predrag Kukic; Christopher M Dobson; Michele Vendruscolo; Lisa D Cabrita; John Christodoulou
Journal:  Proc Natl Acad Sci U S A       Date:  2016-04-18       Impact factor: 11.205

10.  The de novo synthesis of ubiquitin: identification of deubiquitinases acting on ubiquitin precursors.

Authors:  Cláudia P Grou; Manuel P Pinto; Andreia V Mendes; Pedro Domingues; Jorge E Azevedo
Journal:  Sci Rep       Date:  2015-08-03       Impact factor: 4.379
  10 in total

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