Literature DB >> 17360367

Convergent chemical synthesis and high-resolution x-ray structure of human lysozyme.

Thomas Durek1, Vladimir Yu Torbeev, Stephen B H Kent.   

Abstract

In this article, we report the total chemical synthesis of human lysozyme. Lysozyme serves as a widespread model system in various fields of biochemical research, including protein folding, enzyme catalysis, and amyloidogenesis. The 130-aa wild-type polypeptide chain of the human enzyme was assembled from four polypeptide segments by using native chemical ligation in a fully convergent fashion. Key to the assembly strategy is the application of the recently developed kinetically controlled ligation methodology, which provides efficient control over the ligation of two peptide (alpha)thioesters to yield a unique product. This result enables the facile preparation of a 64-residue peptide (alpha)thioester; this segment is joined by native chemical ligation to a 66-aa Cys peptide, to yield the target 130-aa polypeptide chain. The synthetic polypeptide chain was folded in vitro into a defined tertiary structure with concomitant formation of four disulfides, as shown by 2D TOCSY NMR spectroscopy. The structure of the synthetic human lysozyme was confirmed by high-resolution x-ray diffraction, giving the highest-resolution structure (1.04 A) observed to date for this enzyme. Synthetic lysozyme was obtained in good yield and excellent purity and had full enzymatic activity. This facile and efficient convergent synthesis scheme will enable preparation of unique chemical analogs of the lysozyme molecule and will prove useful in numerous areas of lysozyme research in the future.

Entities:  

Mesh:

Substances:

Year:  2007        PMID: 17360367      PMCID: PMC1829227          DOI: 10.1073/pnas.0610630104

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  34 in total

Review 1.  Chemical protein synthesis.

Authors:  G G Kochendoerfer; S B Kent
Journal:  Curr Opin Chem Biol       Date:  1999-12       Impact factor: 8.822

2.  Covalent capture: a new tool for the purification of synthetic and recombinant polypeptides.

Authors:  M Villain; J Vizzavona; K Rose
Journal:  Chem Biol       Date:  2001-07

3.  The lysozyme mechanism sorted -- after 50 years.

Authors:  A J Kirby
Journal:  Nat Struct Biol       Date:  2001-09

4.  Structure of tetragonal hen egg-white lysozyme at 0.94 A from crystals grown by the counter-diffusion method.

Authors:  C Sauter; F Otálora; J A Gavira; O Vidal; R Giegé; J M García-Ruiz
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2001-07-23

5.  Catalysis by hen egg-white lysozyme proceeds via a covalent intermediate.

Authors:  D J Vocadlo; G J Davies; R Laine; S G Withers
Journal:  Nature       Date:  2001-08-23       Impact factor: 49.962

6.  Design and chemical synthesis of a homogeneous polymer-modified erythropoiesis protein.

Authors:  Gerd G Kochendoerfer; Shiah-Yun Chen; Feng Mao; Sonya Cressman; Stacey Traviglia; Haiyan Shao; Christie L Hunter; Donald W Low; E Neil Cagle; Maia Carnevali; Vincent Gueriguian; Peter J Keogh; Heather Porter; Stephen M Stratton; M Con Wiedeke; Jill Wilken; Jie Tang; Jay J Levy; Les P Miranda; Milan M Crnogorac; Suresh Kalbag; Paolo Botti; Janice Schindler-Horvat; Laura Savatski; John W Adamson; Ada Kung; Stephen B H Kent; James A Bradburne
Journal:  Science       Date:  2003-02-07       Impact factor: 47.728

7.  Total chemical synthesis of enzymes.

Authors:  Stephen Kent
Journal:  J Pept Sci       Date:  2003-09       Impact factor: 1.905

8.  Kinetically controlled ligation for the convergent chemical synthesis of proteins.

Authors:  Duhee Bang; Brad L Pentelute; Stephen B H Kent
Journal:  Angew Chem Int Ed Engl       Date:  2006-06-12       Impact factor: 15.336

9.  Assignments of 1H, 13C, and 15N resonances of human lysozyme at 4 degrees C.

Authors:  Hiroyuki Kumeta; Yoshihiro Kobashigawa; Kazunori Miura; Yoshiyuki Nishimiya; Chitoshi Oka; Nobuaki Nemoto; Ai Miura; Katsutoshi Nitta; Sakae Tsuda
Journal:  J Biomol NMR       Date:  2002-02       Impact factor: 2.835

Review 10.  Strategies for new antimicrobial proteins and peptides: lysozyme and aprotinin as model molecules.

Authors:  Hisham R Ibrahim; Takayoshi Aoki; Antonio Pellegrini
Journal:  Curr Pharm Des       Date:  2002       Impact factor: 3.116

View more
  24 in total

1.  t-boc synthesis of huwentoxin-i through native chemical ligation incorporating a trifluoromethanesulfonic acid cleavage strategy.

Authors:  Parashar Thapa; Chino C Cabalteja; Edwin E Philips; Michael J Espiritu; Steve Peigneur; Bea G Mille; Jan Tytgat; Theodore R Cummins; Jon-Paul Bingham
Journal:  Biopolymers       Date:  2016-09       Impact factor: 2.505

2.  Two types of amorphous protein particles facilitate crystal nucleation.

Authors:  Tomoya Yamazaki; Yuki Kimura; Peter G Vekilov; Erika Furukawa; Manabu Shirai; Hiroaki Matsumoto; Alexander E S Van Driessche; Katsuo Tsukamoto
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-13       Impact factor: 11.205

3.  Total chemical synthesis of human T-cell leukemia virus type 1 protease via native chemical ligation.

Authors:  Changqing Li; Xiangqun Li; Wuyuan Lu
Journal:  Biopolymers       Date:  2010       Impact factor: 2.505

4.  Total chemical synthesis, refolding, and crystallographic structure of fully active immunophilin calstabin 2 (FKBP12.6).

Authors:  Marine Bacchi; Magali Jullian; Serena Sirigu; Benjamin Fould; Tiphaine Huet; Lisa Bruyand; Mathias Antoine; Laurent Vuillard; Luisa Ronga; Leonard M G Chavas; Olivier Nosjean; Gilles Ferry; Karine Puget; Jean A Boutin
Journal:  Protein Sci       Date:  2016-10-13       Impact factor: 6.725

5.  Convergent chemical synthesis of [lysine(24,38,83)] human erythropoietin.

Authors:  Suhuai Liu; Brad L Pentelute; Stephen B H Kent
Journal:  Angew Chem Int Ed Engl       Date:  2011-12-16       Impact factor: 15.336

6.  Free energy surfaces for the interaction of D-glucose with planar aromatic groups in aqueous solution.

Authors:  Jakob Wohlert; Udo Schnupf; John W Brady
Journal:  J Chem Phys       Date:  2010-10-21       Impact factor: 3.488

7.  Engineering of therapeutic polypeptides through chemical synthesis: early lessons from human parathyroid hormone and analogues.

Authors:  Suwei Dong; Shiying Shang; Jianfeng Li; Zhongping Tan; Thomas Dean; Akira Maeda; Thomas J Gardella; Samuel J Danishefsky
Journal:  J Am Chem Soc       Date:  2012-08-29       Impact factor: 15.419

8.  At last: erythropoietin as a single glycoform.

Authors:  Ping Wang; Suwei Dong; John A Brailsford; Karthik Iyer; Steven D Townsend; Qiang Zhang; Ronald C Hendrickson; JaeHung Shieh; Malcolm A S Moore; Samuel J Danishefsky
Journal:  Angew Chem Int Ed Engl       Date:  2012-09-25       Impact factor: 15.336

9.  X-ray structure of snow flea antifreeze protein determined by racemic crystallization of synthetic protein enantiomers.

Authors:  Brad L Pentelute; Zachary P Gates; Valentina Tereshko; Jennifer L Dashnau; Jane M Vanderkooi; Anthony A Kossiakoff; Stephen B H Kent
Journal:  J Am Chem Soc       Date:  2008-07-04       Impact factor: 15.419

10.  Revisiting oxytocin through the medium of isonitriles.

Authors:  Ting Wang; Samuel J Danishefsky
Journal:  J Am Chem Soc       Date:  2012-08-02       Impact factor: 15.419

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.