Literature DB >> 17358571

Symmetry-breaking model for X-chromosome inactivation.

Mario Nicodemi1, Antonella Prisco.   

Abstract

In mammals, dosage compensation of X linked genes in female cells is achieved by inactivation of one of their two X chromosomes which is randomly chosen. The earliest steps in X-chromosome inactivation (XCI), namely, the mechanism whereby cells count their X chromosomes and choose between two equivalent X chromosomes, remain mysterious. Starting from the recent discovery of X chromosome colocalization at the onset of X-chromosome inactivation, we propose a statistical mechanics model of XCI, which is investigated by computer simulations and checked against experimental data. Our model describes how a "blocking factor" complex is self-assembled and why only one is formed out of many diffusible molecules, resulting in a spontaneous symmetry breaking in the binding to two identical chromosomes. These results are used to derive a scenario of biological implications.

Mesh:

Year:  2007        PMID: 17358571     DOI: 10.1103/PhysRevLett.98.108104

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  28 in total

Review 1.  Gracefully ageing at 50, X-chromosome inactivation becomes a paradigm for RNA and chromatin control.

Authors:  Jeannie T Lee
Journal:  Nat Rev Mol Cell Biol       Date:  2011-11-23       Impact factor: 94.444

Review 2.  The X as model for RNA's niche in epigenomic regulation.

Authors:  Jeannie T Lee
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-03-31       Impact factor: 10.005

Review 3.  Nuclear organization and dosage compensation.

Authors:  Jennifer C Chow; Edith Heard
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-10-13       Impact factor: 10.005

4.  Thermodynamic pathways to genome spatial organization in the cell nucleus.

Authors:  Mario Nicodemi; Antonella Prisco
Journal:  Biophys J       Date:  2009-03-18       Impact factor: 4.033

5.  A thermodynamic switch for chromosome colocalization.

Authors:  Mario Nicodemi; Barbara Panning; Antonella Prisco
Journal:  Genetics       Date:  2008-05       Impact factor: 4.562

6.  Lessons from X-chromosome inactivation: long ncRNA as guides and tethers to the epigenome.

Authors:  Jeannie T Lee
Journal:  Genes Dev       Date:  2009-08-15       Impact factor: 11.361

Review 7.  Lessons from comparative analysis of X-chromosome inactivation in mammals.

Authors:  Ikuhiro Okamoto; Edith Heard
Journal:  Chromosome Res       Date:  2009       Impact factor: 5.239

Review 8.  Regulation of X-chromosome inactivation by the X-inactivation centre.

Authors:  Sandrine Augui; Elphège P Nora; Edith Heard
Journal:  Nat Rev Genet       Date:  2011-06       Impact factor: 53.242

9.  Colocalization of multiple DNA loci: a physical mechanism.

Authors:  Valentino Bianco; Antonio Scialdone; Mario Nicodemi
Journal:  Biophys J       Date:  2012-11-20       Impact factor: 4.033

10.  DNA loci cross-talk through thermodynamics.

Authors:  Antonio Scialdone; Mario Nicodemi
Journal:  J Biomed Biotechnol       Date:  2009-09-16
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