Literature DB >> 17343568

Catalytic mechanism of Zn2+-dependent polyol dehydrogenases: kinetic comparison of sheep liver sorbitol dehydrogenase with wild-type and Glu154-->Cys forms of yeast xylitol dehydrogenase.

Mario Klimacek1, Heidemarie Hellmer, Bernd Nidetzky.   

Abstract

Co-ordination of catalytic Zn2+ in sorbitol/xylitol dehydrogenases of the medium-chain dehydrogenase/reductase superfamily involves direct or water-mediated interactions from a glutamic acid residue, which substitutes a homologous cysteine ligand in alcohol dehydrogenases of the yeast and liver type. Glu154 of xylitol dehydrogenase from the yeast Galactocandida mastotermitis (termed GmXDH) was mutated to a cysteine residue (E154C) to revert this replacement. In spite of their variable Zn2+ content (0.10-0.40 atom/subunit), purified preparations of E154C exhibited a constant catalytic Zn2+ centre activity (kcat) of 1.19+/-0.03 s(-1) and did not require exogenous Zn2+ for activity or stability. E154C retained 0.019+/-0.003% and 0.74+/-0.03% of wild-type catalytic efficiency (kcat/K(sorbitol)=7800+/-700 M(-1) x s(-1)) and kcat (=161+/-4 s(-1)) for NAD+-dependent oxidation of sorbitol at 25 degrees C respectively. The pH profile of kcat/K(sorbitol) for E154C decreased below an apparent pK of 9.1+/-0.3, reflecting a shift in pK by about +1.7-1.9 pH units compared with the corresponding pH profiles for GmXDH and sheep liver sorbitol dehydrogenase (termed slSDH). The difference in pK for profiles determined in 1H2O and 2H2O solvent was similar and unusually small for all three enzymes (approximately +0.2 log units), suggesting that the observed pK in the binary enzyme-NAD+ complexes could be due to Zn2+-bound water. Under conditions eliminating their different pH-dependences, wild-type and mutant GmXDH displayed similar primary and solvent deuterium kinetic isotope effects of 1.7+/-0.2 (E154C, 1.7+/-0.1) and 1.9+/-0.3 (E154C, 2.4+/-0.2) on kcat/K(sorbitol) respectively. Transient kinetic studies of NAD+ reduction and proton release during sorbitol oxidation by slSDH at pH 8.2 show that two protons are lost with a rate constant of 687+/-12 s(-1) in the pre-steady state, which features a turnover of 0.9+/-0.1 enzyme equivalents as NADH was produced with a rate constant of 409+/-3 s(-1). The results support an auxiliary participation of Glu154 in catalysis, and possible mechanisms of proton transfer in sorbitol/xylitol dehydrogenases are discussed.

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Year:  2007        PMID: 17343568      PMCID: PMC1896283          DOI: 10.1042/BJ20061384

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  30 in total

1.  Deprotonation of the horse liver alcohol dehydrogenase-NAD+ complex controls formation of the ternary complexes.

Authors:  Elena G Kovaleva; Bryce V Plapp
Journal:  Biochemistry       Date:  2005-09-27       Impact factor: 3.162

2.  On the role of Glu-68 in alcohol dehydrogenase.

Authors:  U Ryde
Journal:  Protein Sci       Date:  1995-06       Impact factor: 6.725

3.  Substrate specificity of sheep liver sorbitol dehydrogenase.

Authors:  R I Lindstad; P Köll; J S McKinley-McKee
Journal:  Biochem J       Date:  1998-02-15       Impact factor: 3.857

4.  Site-directed mutagenesis by overlap extension using the polymerase chain reaction.

Authors:  S N Ho; H D Hunt; R M Horton; J K Pullen; L R Pease
Journal:  Gene       Date:  1989-04-15       Impact factor: 3.688

5.  Rate constants for a mechanism including intermediates in the interconversion of ternary complexes by horse liver alcohol dehydrogenase.

Authors:  V C Sekhar; B V Plapp
Journal:  Biochemistry       Date:  1990-05-08       Impact factor: 3.162

6.  Structural and functional properties of a yeast xylitol dehydrogenase, a Zn2+-containing metalloenzyme similar to medium-chain sorbitol dehydrogenases.

Authors:  R Lunzer; Y Mamnun; D Haltrich; K D Kulbe; B Nidetzky
Journal:  Biochem J       Date:  1998-11-15       Impact factor: 3.857

7.  Effect of pH on sheep liver sorbitol dehydrogenase steady-state kinetics.

Authors:  R I Lindstad; J S McKinley-McKee
Journal:  Eur J Biochem       Date:  1995-11-01

8.  The kinetic mechanism of sheep liver sorbitol dehydrogenase.

Authors:  R I Lindstad; L F Hermansen; J S McKinley-McKee
Journal:  Eur J Biochem       Date:  1992-12-01

9.  The structural basis of substrate promiscuity in glucose dehydrogenase from the hyperthermophilic archaeon Sulfolobus solfataricus.

Authors:  Christine C Milburn; Henry J Lamble; Alex Theodossis; Steven D Bull; David W Hough; Michael J Danson; Garry L Taylor
Journal:  J Biol Chem       Date:  2006-03-23       Impact factor: 5.157

10.  A super-family of medium-chain dehydrogenases/reductases (MDR). Sub-lines including zeta-crystallin, alcohol and polyol dehydrogenases, quinone oxidoreductase enoyl reductases, VAT-1 and other proteins.

Authors:  B Persson; J S Zigler; H Jörnvall
Journal:  Eur J Biochem       Date:  1994-11-15
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  4 in total

1.  Analysis and prediction of the physiological effects of altered coenzyme specificity in xylose reductase and xylitol dehydrogenase during xylose fermentation by Saccharomyces cerevisiae.

Authors:  Stefan Krahulec; Mario Klimacek; Bernd Nidetzky
Journal:  J Biotechnol       Date:  2011-08-25       Impact factor: 3.307

2.  Dynamic mechanism of proton transfer in mannitol 2-dehydrogenase from Pseudomonas fluorescens: mobile GLU292 controls proton relay through a water channel that connects the active site with bulk solvent.

Authors:  Mario Klimacek; Michael Brunsteiner; Bernd Nidetzky
Journal:  J Biol Chem       Date:  2011-12-22       Impact factor: 5.157

3.  Structure-Reactivity Effects on Intrinsic Primary Kinetic Isotope Effects for Hydride Transfer Catalyzed by Glycerol-3-phosphate Dehydrogenase.

Authors:  Archie C Reyes; Tina L Amyes; John P Richard
Journal:  J Am Chem Soc       Date:  2016-10-27       Impact factor: 15.419

4.  Active site dynamics in the zinc-dependent medium chain alcohol dehydrogenase superfamily.

Authors:  Patrick J Baker; K Linda Britton; Martin Fisher; Julia Esclapez; Carmen Pire; Maria Jose Bonete; Juan Ferrer; David W Rice
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-08       Impact factor: 11.205

  4 in total

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