Literature DB >> 17337784

Deciphering the complexity of acute inflammation using mathematical models.

Yoram Vodovotz1.   

Abstract

Various stresses elicit an acute, complex inflammatory response, leading to healing but sometimes also to organ dysfunction and death. We constructed both equation-based models (EBM) and agent-based models (ABM) of various degrees of granularity--which encompass the dynamics of relevant cells, cytokines, and the resulting global tissue dysfunction--in order to begin to unravel these inflammatory interactions. The EBMs describe and predict various features of septic shock and trauma/hemorrhage (including the response to anthrax, preconditioning phenomena, and irreversible hemorrhage) and were used to simulate anti-inflammatory strategies in clinical trials. The ABMs that describe the interrelationship between inflammation and wound healing yielded insights into intestinal healing in necrotizing enterocolitis, vocal fold healing during phonotrauma, and skin healing in the setting of diabetic foot ulcers. Modeling may help in understanding the complex interactions among the components of inflammation and response to stress, and therefore aid in the development of novel therapies and diagnostics.

Entities:  

Mesh:

Year:  2006        PMID: 17337784     DOI: 10.1385/IR:36:1:237

Source DB:  PubMed          Journal:  Immunol Res        ISSN: 0257-277X            Impact factor:   2.829


  22 in total

Review 1.  Aging and innate immune cells.

Authors:  Timothy P Plackett; Eric D Boehmer; Douglas E Faunce; Elizabeth J Kovacs
Journal:  J Leukoc Biol       Date:  2004-03-23       Impact factor: 4.962

2.  Epidemiology of severe sepsis in the United States: analysis of incidence, outcome, and associated costs of care.

Authors:  D C Angus; W T Linde-Zwirble; J Lidicker; G Clermont; J Carcillo; M R Pinsky
Journal:  Crit Care Med       Date:  2001-07       Impact factor: 7.598

3.  The role of initial trauma in the host's response to injury and hemorrhage: insights from a correlation of mathematical simulations and hepatic transcriptomic analysis.

Authors:  Claudio E Lagoa; John Bartels; Arie Baratt; George Tseng; Gilles Clermont; Mitchell P Fink; Timothy R Billiar; Yoram Vodovotz
Journal:  Shock       Date:  2006-12       Impact factor: 3.454

4.  Atmospheric science. Weather forecasting with ensemble methods.

Authors:  Tilmann Gneiting; Adrian E Raftery
Journal:  Science       Date:  2005-10-14       Impact factor: 47.728

5.  In silico experiments of existing and hypothetical cytokine-directed clinical trials using agent-based modeling.

Authors:  Gary An
Journal:  Crit Care Med       Date:  2004-10       Impact factor: 7.598

6.  A reduced mathematical model of the acute inflammatory response II. Capturing scenarios of repeated endotoxin administration.

Authors:  Judy Day; Jonathan Rubin; Yoram Vodovotz; Carson C Chow; Angela Reynolds; Gilles Clermont
Journal:  J Theor Biol       Date:  2006-04-17       Impact factor: 2.691

7.  A reduced mathematical model of the acute inflammatory response: I. Derivation of model and analysis of anti-inflammation.

Authors:  Angela Reynolds; Jonathan Rubin; Gilles Clermont; Judy Day; Yoram Vodovotz; G Bard Ermentrout
Journal:  J Theor Biol       Date:  2006-04-03       Impact factor: 2.691

Review 8.  Disordered enterocyte signaling and intestinal barrier dysfunction in the pathogenesis of necrotizing enterocolitis.

Authors:  David J Hackam; Jeffrey S Upperman; Anatoly Grishin; Henri R Ford
Journal:  Semin Pediatr Surg       Date:  2005-02       Impact factor: 2.754

Review 9.  Mathematical models of the acute inflammatory response.

Authors:  Yoram Vodovotz; Gilles Clermont; Carson Chow; Gary An
Journal:  Curr Opin Crit Care       Date:  2004-10       Impact factor: 3.687

10.  Endotoxin inhibits intestinal epithelial restitution through activation of Rho-GTPase and increased focal adhesions.

Authors:  Selma Cetin; Henri R Ford; Laura R Sysko; Charu Agarwal; James Wang; Matthew D Neal; Catherine Baty; Gerard Apodaca; David J Hackam
Journal:  J Biol Chem       Date:  2004-03-30       Impact factor: 5.157

View more
  26 in total

Review 1.  Systems immunology: a survey of modeling formalisms, applications and simulation tools.

Authors:  Vipin Narang; James Decraene; Shek-Yoon Wong; Bindu S Aiswarya; Andrew R Wasem; Shiang Rong Leong; Alexandre Gouaillard
Journal:  Immunol Res       Date:  2012-09       Impact factor: 2.829

Review 2.  Translational potential of systems-based models of inflammation.

Authors:  P T Foteinou; S E Calvano; S F Lowry; I P Androulakis
Journal:  Clin Transl Sci       Date:  2009-02       Impact factor: 4.689

Review 3.  Translational systems approaches to the biology of inflammation and healing.

Authors:  Yoram Vodovotz; Gregory Constantine; James Faeder; Qi Mi; Jonathan Rubin; John Bartels; Joydeep Sarkar; Robert H Squires; David O Okonkwo; Jörg Gerlach; Ruben Zamora; Shirley Luckhart; Bard Ermentrout; Gary An
Journal:  Immunopharmacol Immunotoxicol       Date:  2010-06       Impact factor: 2.730

Review 4.  Translational systems biology: introduction of an engineering approach to the pathophysiology of the burn patient.

Authors:  Gary An; James Faeder; Yoram Vodovotz
Journal:  J Burn Care Res       Date:  2008 Mar-Apr       Impact factor: 1.845

Review 5.  Modeling sepsis in the laboratory: merging sound science with animal well-being.

Authors:  Jean A Nemzek; Kelly M S Hugunin; Mark R Opp
Journal:  Comp Med       Date:  2008-04       Impact factor: 0.982

6.  In vivo and systems biology studies implicate IL-18 as a central mediator in chronic pain.

Authors:  Kiran Vasudeva; Yoram Vodovotz; Nabil Azhar; Derek Barclay; Jelena M Janjic; John A Pollock
Journal:  J Neuroimmunol       Date:  2015-04-28       Impact factor: 3.478

7.  A two-compartment mathematical model of endotoxin-induced inflammatory and physiologic alterations in swine.

Authors:  Gary Nieman; David Brown; Joydeep Sarkar; Brian Kubiak; Cordelia Ziraldo; Joyeeta Dutta-Moscato; Christopher Vieau; Derek Barclay; Louis Gatto; Kristopher Maier; Gregory Constantine; Timothy R Billiar; Ruben Zamora; Qi Mi; Steve Chang; Yoram Vodovotz
Journal:  Crit Care Med       Date:  2012-04       Impact factor: 7.598

8.  A three-dimensional mathematical and computational model of necrotizing enterocolitis.

Authors:  Jared Barber; Mark Tronzo; C Harold Horvat; Gilles Clermont; Jeffrey Upperman; Yoram Vodovotz; Ivan Yotov
Journal:  J Theor Biol       Date:  2012-12-07       Impact factor: 2.691

9.  A simple mathematical model of signaling resulting from the binding of lipopolysaccharide with Toll-like receptor 4 demonstrates inherent preconditioning behavior.

Authors:  Beatrice Rivière; Yekaterina Epshteyn; David Swigon; Yoram Vodovotz
Journal:  Math Biosci       Date:  2008-10-11       Impact factor: 2.144

10.  A systems model for immune cell interactions unravels the mechanism of inflammation in human skin.

Authors:  Najl V Valeyev; Christian Hundhausen; Yoshinori Umezawa; Nikolay V Kotov; Gareth Williams; Alex Clop; Crysanthi Ainali; Christos Ouzounis; Sophia Tsoka; Frank O Nestle
Journal:  PLoS Comput Biol       Date:  2010-12-02       Impact factor: 4.475

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.