Literature DB >> 17329816

The use of Co2+ for crystallization and structure determination, using a conventional monochromatic X-ray source, of flax rust avirulence protein.

Gregor Guncar1, Ching-I A Wang, Jade K Forwood, Trazel Teh, Ann-Maree Catanzariti, Jeffrey G Ellis, Peter N Dodds, Bostjan Kobe.   

Abstract

Metal-binding sites are ubiquitous in proteins and can be readily utilized for phasing. It is shown that a protein crystal structure can be solved using single-wavelength anomalous diffraction based on the anomalous signal of a cobalt ion measured on a conventional monochromatic X-ray source. The unique absorption edge of cobalt (1.61 A) is compatible with the Cu K alpha wavelength (1.54 A) commonly available in macromolecular crystallography laboratories. This approach was applied to the determination of the structure of Melampsora lini avirulence protein AvrL567-A, a protein with a novel fold from the fungal pathogen flax rust that induces plant disease resistance in flax plants. This approach using cobalt ions may be applicable to all cobalt-binding proteins and may be advantageous when synchrotron radiation is not readily available.

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Year:  2007        PMID: 17329816      PMCID: PMC2330185          DOI: 10.1107/S1744309107004599

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  35 in total

1.  SFCHECK: a unified set of procedures for evaluating the quality of macromolecular structure-factor data and their agreement with the atomic model.

Authors:  A A Vaguine; J Richelle; S J Wodak
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-01-01

2.  Is it jolly SAD?

Authors:  Eleanor Dodson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2003-10-23

3.  Automated structure solution, density modification and model building.

Authors:  Thomas C Terwilliger
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-10-21

4.  Substructure solution with SHELXD.

Authors:  Thomas R Schneider; George M Sheldrick
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-09-28

5.  An efficient system for high-level expression and easy purification of authentic recombinant proteins.

Authors:  Ann-Maree Catanzariti; Tatiana A Soboleva; David A Jans; Philip G Board; Rohan T Baker
Journal:  Protein Sci       Date:  2004-05       Impact factor: 6.725

6.  The structural basis for molecular recognition by the vitamin B 12 RNA aptamer.

Authors:  D Sussman; J C Nix; C Wilson
Journal:  Nat Struct Biol       Date:  2000-01

7.  Cobalt and ruthenium replacement for iron in adrenal iron-sulfur protein (adrenodoxin). Preparation and some properties.

Authors:  Y Sugiura; K Ishizu; T Kimura
Journal:  Biochemistry       Date:  1975-01-14       Impact factor: 3.162

8.  Crystal structure of the Actinomadura R39 DD-peptidase reveals new domains in penicillin-binding proteins.

Authors:  Eric Sauvage; Raphaël Herman; Stephanie Petrella; Colette Duez; Fabrice Bouillenne; Jean-Marie Frère; Paulette Charlier
Journal:  J Biol Chem       Date:  2005-06-29       Impact factor: 5.157

9.  Genome-scale protein expression and structural biology of Plasmodium falciparum and related Apicomplexan organisms.

Authors:  Masoud Vedadi; Jocelyne Lew; Jennifer Artz; Mehrnaz Amani; Yong Zhao; Aiping Dong; Gregory A Wasney; Mian Gao; Tanya Hills; Stephen Brokx; Wei Qiu; Sujata Sharma; Angelina Diassiti; Zahoor Alam; Michelle Melone; Anne Mulichak; Amy Wernimont; James Bray; Peter Loppnau; Olga Plotnikova; Kate Newberry; Emayavaram Sundararajan; Simon Houston; John Walker; Wolfram Tempel; Alexey Bochkarev; Ivona Kozieradzki; Aled Edwards; Cheryl Arrowsmith; David Roos; Kevin Kain; Raymond Hui
Journal:  Mol Biochem Parasitol       Date:  2006-11-13       Impact factor: 1.759

10.  Automated MAD and MIR structure solution.

Authors:  T C Terwilliger; J Berendzen
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-04
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  7 in total

1.  A general strategy to solve the phase problem in RNA crystallography.

Authors:  Amanda Y Keel; Robert P Rambo; Robert T Batey; Jeffrey S Kieft
Journal:  Structure       Date:  2007-07       Impact factor: 5.006

2.  Role of the N-terminus in determining metal-specific responses in the E. coli Ni- and Co-responsive metalloregulator, RcnR.

Authors:  Khadine A Higgins; Peter T Chivers; Michael J Maroney
Journal:  J Am Chem Soc       Date:  2012-04-11       Impact factor: 15.419

3.  Probing the 3-D structure, dynamics, and stability of bacterial collagenase collagen binding domain (apo- versus holo-) by limited proteolysis MALDI-TOF MS.

Authors:  Cynthia R Sides; Rohana Liyanage; Jackson O Lay; Sagaya Theresa Leena Philominathan; Osamu Matsushita; Joshua Sakon
Journal:  J Am Soc Mass Spectrom       Date:  2011-12-30       Impact factor: 3.109

4.  In-house SAD phasing with surface-bound cerium ions.

Authors:  K Natesan Vennila; Devadasan Velmurugan
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-11-25

5.  An approach to crystallizing proteins by metal-mediated synthetic symmetrization.

Authors:  Arthur Laganowsky; Minglei Zhao; Angela B Soriaga; Michael R Sawaya; Duilio Cascio; Todd O Yeates
Journal:  Protein Sci       Date:  2011-09-30       Impact factor: 6.725

6.  Crystal structures of flax rust avirulence proteins AvrL567-A and -D reveal details of the structural basis for flax disease resistance specificity.

Authors:  Ching-I A Wang; Gregor Guncar; Jade K Forwood; Trazel Teh; Ann-Maree Catanzariti; Gregory J Lawrence; Fionna E Loughlin; Joel P Mackay; Horst Joachim Schirra; Peter A Anderson; Jeffrey G Ellis; Peter N Dodds; Bostjan Kobe
Journal:  Plant Cell       Date:  2007-09-14       Impact factor: 11.277

7.  Effects of select histidine to cysteine mutations on transcriptional regulation by Escherichia coli RcnR.

Authors:  Khadine A Higgins; Heidi Q Hu; Peter T Chivers; Michael J Maroney
Journal:  Biochemistry       Date:  2012-12-24       Impact factor: 3.162

  7 in total

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