Literature DB >> 17322877

An RNA G-quadruplex in the 5' UTR of the NRAS proto-oncogene modulates translation.

Sunita Kumari1, Anthony Bugaut, Julian L Huppert, Shankar Balasubramanian.   

Abstract

Guanine-rich nucleic acid sequences can adopt noncanonical four-stranded secondary structures called guanine (G)-quadruplexes. Bioinformatics analysis suggests that G-quadruplex motifs are prevalent in genomes, which raises the need to elucidate their function. There is now evidence for the existence of DNA G-quadruplexes at telomeres with associated biological function. A recent hypothesis supports the notion that gene promoter elements contain DNA G-quadruplex motifs that control gene expression at the transcriptional level. We discovered a highly conserved, thermodynamically stable RNA G-quadruplex in the 5' untranslated region (UTR) of the gene transcript of the human NRAS proto-oncogene. Using a cell-free translation system coupled to a reporter gene assay, we have demonstrated that this NRAS RNA G-quadruplex modulates translation. This is the first example of translational repression by an RNA G-quadruplex. Bioinformatics analysis has revealed 2,922 other 5' UTR RNA G-quadruplex elements in the human genome. We propose that RNA G-quadruplexes in the 5' UTR modulate gene expression at the translational level.

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Year:  2007        PMID: 17322877      PMCID: PMC2206252          DOI: 10.1038/nchembio864

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  17 in total

Review 1.  Translational control of growth factor and proto-oncogene expression.

Authors:  A E Willis
Journal:  Int J Biochem Cell Biol       Date:  1999-01       Impact factor: 5.085

2.  Engineering the quadruplex fold: nucleoside conformation determines both folding topology and molecularity in guanine quadruplexes.

Authors:  Chung-Fei Tang; Richard H Shafer
Journal:  J Am Chem Soc       Date:  2006-05-03       Impact factor: 15.419

3.  Hairpin and parallel quartet structures for telomeric sequences.

Authors:  P Balagurumoorthy; S K Brahmachari; D Mohanty; M Bansal; V Sasisekharan
Journal:  Nucleic Acids Res       Date:  1992-08-11       Impact factor: 16.971

4.  Telomere end-binding proteins control the formation of G-quadruplex DNA structures in vivo.

Authors:  Katrin Paeschke; Tomas Simonsson; Jan Postberg; Daniela Rhodes; Hans Joachim Lipps
Journal:  Nat Struct Mol Biol       Date:  2005-09-04       Impact factor: 15.369

Review 5.  Structural features in eukaryotic mRNAs that modulate the initiation of translation.

Authors:  M Kozak
Journal:  J Biol Chem       Date:  1991-10-25       Impact factor: 5.157

6.  Following G-quartet formation by UV-spectroscopy.

Authors:  J L Mergny; A T Phan; L Lacroix
Journal:  FEBS Lett       Date:  1998-09-11       Impact factor: 4.124

7.  Suppression of oncogenic NRAS by RNA interference induces apoptosis of human melanoma cells.

Authors:  Malihe Eskandarpour; Shahryar Kiaii; Chaoyong Zhu; Juan Castro; Andrew J Sakko; Johan Hansson
Journal:  Int J Cancer       Date:  2005-05-20       Impact factor: 7.396

8.  Cation-dependent transition between the quadruplex and Watson-Crick hairpin forms of d(CGCG3GCG).

Authors:  C C Hardin; T Watson; M Corregan; C Bailey
Journal:  Biochemistry       Date:  1992-01-28       Impact factor: 3.162

9.  Prevalence of quadruplexes in the human genome.

Authors:  Julian L Huppert; Shankar Balasubramanian
Journal:  Nucleic Acids Res       Date:  2005-05-24       Impact factor: 16.971

10.  The effect of chemical modifications on the thermal stability of different G-quadruplex-forming oligonucleotides.

Authors:  Barbara Saccà; Laurent Lacroix; Jean-Louis Mergny
Journal:  Nucleic Acids Res       Date:  2005-02-24       Impact factor: 16.971

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  268 in total

Review 1.  New roles of carboxypeptidase E in endocrine and neural function and cancer.

Authors:  Niamh X Cawley; William C Wetsel; Saravana R K Murthy; Joshua J Park; Karel Pacak; Y Peng Loh
Journal:  Endocr Rev       Date:  2012-03-07       Impact factor: 19.871

2.  Translational repression of the disintegrin and metalloprotease ADAM10 by a stable G-quadruplex secondary structure in its 5'-untranslated region.

Authors:  Sven Lammich; Frits Kamp; Judith Wagner; Brigitte Nuscher; Sonja Zilow; Ann-Katrin Ludwig; Michael Willem; Christian Haass
Journal:  J Biol Chem       Date:  2011-11-07       Impact factor: 5.157

3.  Solution structure of a 2:1 quindoline-c-MYC G-quadruplex: insights into G-quadruplex-interactive small molecule drug design.

Authors:  Jixun Dai; Megan Carver; Laurence H Hurley; Danzhou Yang
Journal:  J Am Chem Soc       Date:  2011-10-14       Impact factor: 15.419

4.  The BCL-2 5' untranslated region contains an RNA G-quadruplex-forming motif that modulates protein expression.

Authors:  Ramla Shahid; Anthony Bugaut; Shankar Balasubramanian
Journal:  Biochemistry       Date:  2010-09-28       Impact factor: 3.162

5.  Downregulation of the WT1 gene expression via TMPyP4 stabilization of promoter G-quadruplexes in leukemia cells.

Authors:  Saeedeh Ghazaey Zidanloo; Abasalt Hosseinzadeh Colagar; Hossein Ayatollahi; Jahan-Bakhsh Raoof
Journal:  Tumour Biol       Date:  2016-01-27

6.  Effects of site-specific guanine C8-modifications on an intramolecular DNA G-quadruplex.

Authors:  Christopher Jacques Lech; Joefina Kim Cheow Lim; Jocelyn Mei Wen Lim; Samir Amrane; Brahim Heddi; Anh Tuân Phan
Journal:  Biophys J       Date:  2011-10-19       Impact factor: 4.033

7.  Use of competition dialysis in the discovery of G-quadruplex selective ligands.

Authors:  Patricia Ragazzon; Jonathan B Chaires
Journal:  Methods       Date:  2007-12       Impact factor: 3.608

Review 8.  Quartets in G-major. The First International Meeting on Quadruplex DNA.

Authors:  Paula Bates; Jean-Louis Mergny; Danzhou Yang
Journal:  EMBO Rep       Date:  2007-09-28       Impact factor: 8.807

Review 9.  In vivo veritas: using yeast to probe the biological functions of G-quadruplexes.

Authors:  Jay E Johnson; Jasmine S Smith; Marina L Kozak; F Brad Johnson
Journal:  Biochimie       Date:  2008-02-21       Impact factor: 4.079

10.  G-quadruplex nucleic acids as therapeutic targets.

Authors:  Shankar Balasubramanian; Stephen Neidle
Journal:  Curr Opin Chem Biol       Date:  2009-06-08       Impact factor: 8.822

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