Literature DB >> 17322535

Crystal structure of AGR_C_4470p from Agrobacterium tumefaciens.

Sergey M Vorobiev1, Helen Neely, Jayaraman Seetharaman, Li-Chung Ma, Rong Xiao, Thomas B Acton, Gaetano T Montelione, Liang Tong.   

Abstract

We report here the crystal structure at 2.0 A resolution of the AGR_C_4470p protein from the Gram-negative bacterium Agrobacterium tumefaciens. The protein is a tightly associated dimer, each subunit of which bears strong structural homology with the two domains of the heme utilization protein ChuS from Escherichia coli and HemS from Yersinia enterocolitica. Remarkably, the organization of the AGR_C_4470p dimer is the same as that of the two domains in ChuS and HemS, providing structural evidence that these two proteins evolved by gene duplication. However, the binding site for heme, while conserved in HemS and ChuS, is not conserved in AGR_C_4470p, suggesting that it probably has a different function. This is supported by the presence of two homologs of AGR_C_4470p in E. coli, in addition to the ChuS protein.

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Year:  2007        PMID: 17322535      PMCID: PMC2203313          DOI: 10.1110/ps.062663307

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  10 in total

1.  SOLVE and RESOLVE: automated structure solution and density modification.

Authors:  Thomas C Terwilliger
Journal:  Methods Enzymol       Date:  2003       Impact factor: 1.600

2.  Substructure solution with SHELXD.

Authors:  Thomas R Schneider; George M Sheldrick
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-09-28

3.  An induced fit conformational change underlies the binding mechanism of the heme transport proteobacteria-protein HemS.

Authors:  Sabine Schneider; Katherine H Sharp; Paul D Barker; Max Paoli
Journal:  J Biol Chem       Date:  2006-08-30       Impact factor: 5.157

4.  Coot: model-building tools for molecular graphics.

Authors:  Paul Emsley; Kevin Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-11-26

5.  Robotic cloning and Protein Production Platform of the Northeast Structural Genomics Consortium.

Authors:  Thomas B Acton; Kristin C Gunsalus; Rong Xiao; Li Chung Ma; James Aramini; Michael C Baran; Yi-Wen Chiang; Teresa Climent; Bonnie Cooper; Natalia G Denissova; Shawn M Douglas; John K Everett; Chi Kent Ho; Daphne Macapagal; Paranji K Rajan; Ritu Shastry; Liang-Yu Shih; G V T Swapna; Michael Wilson; Margaret Wu; Mark Gerstein; Masayori Inouye; John F Hunt; Gaetano T Montelione
Journal:  Methods Enzymol       Date:  2005       Impact factor: 1.600

6.  Crystallography & NMR system: A new software suite for macromolecular structure determination.

Authors:  A T Brünger; P D Adams; G M Clore; W L DeLano; P Gros; R W Grosse-Kunstleve; J S Jiang; J Kuszewski; M Nilges; N S Pannu; R J Read; L M Rice; T Simonson; G L Warren
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-09-01

7.  Identification of an Escherichia coli O157:H7 heme oxygenase with tandem functional repeats.

Authors:  Michael D L Suits; Gour P Pal; Kanji Nakatsu; Allan Matte; Miroslaw Cygler; Zongchao Jia
Journal:  Proc Natl Acad Sci U S A       Date:  2005-11-07       Impact factor: 11.205

8.  Protein structure comparison by alignment of distance matrices.

Authors:  L Holm; C Sander
Journal:  J Mol Biol       Date:  1993-09-05       Impact factor: 5.469

9.  Structure of the Escherichia coli O157:H7 heme oxygenase ChuS in complex with heme and enzymatic inactivation by mutation of the heme coordinating residue His-193.

Authors:  Michael D L Suits; Neilin Jaffer; Zongchao Jia
Journal:  J Biol Chem       Date:  2006-10-05       Impact factor: 5.157

10.  Visualizing and quantifying molecular goodness-of-fit: small-probe contact dots with explicit hydrogen atoms.

Authors:  J M Word; S C Lovell; T H LaBean; H C Taylor; M E Zalis; B K Presley; J S Richardson; D C Richardson
Journal:  J Mol Biol       Date:  1999-01-29       Impact factor: 5.469

  10 in total
  1 in total

1.  Structure and heme binding properties of Escherichia coli O157:H7 ChuX.

Authors:  Michael D L Suits; Jérôme Lang; Gour P Pal; Manon Couture; Zongchao Jia
Journal:  Protein Sci       Date:  2009-04       Impact factor: 6.725

  1 in total

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