Literature DB >> 14696367

SOLVE and RESOLVE: automated structure solution and density modification.

Thomas C Terwilliger1.   

Abstract

SOLVE and RESOLVE have shown that it is possible to automate a significant part of the macromolecular X-ray structure determination process. The key elements of seamless and compatible subprograms, scoring algorithms, and error-tolerant software systems have been important in implementing these programs. The principles used in SOLVE and RESOLVE can be applied to other aspects of structure determination as well, suggesting that full automation of the entire structure determination process from scaling diffraction data to a refined model will be possible in the near future.

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Year:  2003        PMID: 14696367     DOI: 10.1016/S0076-6879(03)74002-6

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  272 in total

1.  Cloning, expression, purification, crystallization and X-ray crystallographic analysis of glucuronic acid dehydrogenase from Chromohalobacter salexigens.

Authors:  Jae-Woo Ahn; Shin Youp Lee; Sangwoo Kim; Sun Ja Cho; Sun Bok Lee; Kyung-Jin Kim
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-05-25

2.  Crystal structure and catalytic mechanism of the LPS 3-O-deacylase PagL from Pseudomonas aeruginosa.

Authors:  Lucy Rutten; Jeroen Geurtsen; Wietske Lambert; Jeroen J M Smolenaers; Alexandre M Bonvin; Alex de Haan; Peter van der Ley; Maarten R Egmond; Piet Gros; Jan Tommassen
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-21       Impact factor: 11.205

3.  Crystal structure of Caenorhabditis elegans HER-1 and characterization of the interaction between HER-1 and TRA-2A.

Authors:  Brent Y Hamaoka; Charles E Dann; Brian V Geisbrecht; Daniel J Leahy
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-02       Impact factor: 11.205

4.  Structure of the MutL C-terminal domain: a model of intact MutL and its roles in mismatch repair.

Authors:  Alba Guarné; Santiago Ramon-Maiques; Erika M Wolff; Rodolfo Ghirlando; Xiaojian Hu; Jeffrey H Miller; Wei Yang
Journal:  EMBO J       Date:  2004-10-07       Impact factor: 11.598

5.  Structure of complement C6 suggests a mechanism for initiation and unidirectional, sequential assembly of membrane attack complex (MAC).

Authors:  Alexander E Aleshin; Ingrid U Schraufstatter; Boguslaw Stec; Laurie A Bankston; Robert C Liddington; Richard G DiScipio
Journal:  J Biol Chem       Date:  2012-01-20       Impact factor: 5.157

6.  Crystal structure of the Rna14-Rna15 complex.

Authors:  Ashley R Paulson; Liang Tong
Journal:  RNA       Date:  2012-04-18       Impact factor: 4.942

7.  Crystallization and preliminary X-ray crystallographic analysis of MinE, the cell-division topological specificity factor from Helicobacter pylori.

Authors:  Gil Bu Kang; Hye Eun Song; Mun Kyoung Kim; Hyung Seop Youn; Jun Yop An; Jung Gyu Lee; Kyung Ryung Park; Soo Hyun Eom
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-04-29

8.  Expression, crystallization and preliminary X-ray analysis of an anomeric inverting agarase from Pseudoalteromonas sp. CY24.

Authors:  Aiming Ren; Zong-Xiang Xia; Wengong Yu; Jiahai Zhou
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-11-26

9.  Expression, purification, crystallization and preliminary X-ray crystallographic analysis of a major fragment of the resuscitation-promoting factor RpfB from Mycobacterium tuberculosis.

Authors:  Alessia Ruggiero; Flavia Squeglia; Luciano Pirone; Stefania Correale; Rita Berisio
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-12-24

10.  Structural and biochemical characterization of the bilin lyase CpcS from Thermosynechococcus elongatus.

Authors:  Christina M Kronfel; Alexandre P Kuzin; Farhad Forouhar; Avijit Biswas; Min Su; Scott Lew; Jayaraman Seetharaman; Rong Xiao; John K Everett; Li-Chung Ma; Thomas B Acton; Gaetano T Montelione; John F Hunt; Corry E C Paul; Tierna M Dragomani; M Nazim Boutaghou; Richard B Cole; Christian Riml; Richard M Alvey; Donald A Bryant; Wendy M Schluchter
Journal:  Biochemistry       Date:  2013-11-19       Impact factor: 3.162

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