Literature DB >> 17277066

Region-specific insertion of transposons in combination with selection for high plasmid transferability and stability accounts for the structural similarity of IncP-1 plasmids.

Masahiro Sota1, Masataka Tsuda, Hirokazu Yano, Haruo Suzuki, Larry J Forney, Eva M Top.   

Abstract

The overall architecture of IncP-1 plasmids is very conserved in that the accessory genes are typically located in one or two specific regions: between oriV and trfA and between the tra and trb operons. Various hypotheses have been formulated to explain this, but none have been tested experimentally. We investigated whether this structural similarity is due to region-specific transposition alone or also is reliant on selection for plasmids with insertions limited to these two regions. We first examined the transposition of Tn21Km into IncP-1beta plasmid pBP136 and found that most Tn21Km insertions (67%) were located around oriV. A similar experiment using the oriV region of IncP-1beta plasmid pUO1 confirmed these results. We then tested the transferability, stability, and fitness cost of different pBP136 derivatives to determine if impairment of these key plasmid characters explained the conserved plasmid architecture. Most of the pBP136 derivatives with insertions in transfer genes were no longer transferable. The plasmids with insertions in the oriV-trfA and tra-trb regions were more stable than other plasmid variants, and one of these also showed a significantly lower fitness cost. In addition, our detailed sequence analysis of IncP-1 plasmids showed that Tn402/5053-like transposons are situated predominantly between the tra and trb operons and close to the putative resolution site for the ParA resolvase, a potential hot spot for those transposons. Our study presents the first empirical evidence that region-specific insertion of transposons in combination with selection for transferable and stable plasmids explains the structural similarity of IncP-1 plasmids.

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Year:  2007        PMID: 17277066      PMCID: PMC1855856          DOI: 10.1128/JB.01906-06

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  55 in total

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Journal:  Curr Opin Biotechnol       Date:  2003-06       Impact factor: 9.740

2.  The complete sequences of plasmids pB2 and pB3 provide evidence for a recent ancestor of the IncP-1beta group without any accessory genes.

Authors:  H Heuer; R Szczepanowski; S Schneiker; A Pühler; E M Top; A Schlüter
Journal:  Microbiology       Date:  2004-11       Impact factor: 2.777

Review 3.  The evolution of IncP catabolic plasmids.

Authors:  Jonathan J Dennis
Journal:  Curr Opin Biotechnol       Date:  2005-06       Impact factor: 9.740

Review 4.  Dynamics of the IncW genetic backbone imply general trends in conjugative plasmid evolution.

Authors:  Raúl Fernández-López; M Pilar Garcillán-Barcia; Carlos Revilla; Miguel Lázaro; Luis Vielva; Fernando de la Cruz
Journal:  FEMS Microbiol Rev       Date:  2006-10-06       Impact factor: 16.408

5.  A correction in the nucleotide sequence of the Tn903 kanamycin resistance determinant in pUC4K.

Authors:  L A Taylor; R E Rose
Journal:  Nucleic Acids Res       Date:  1988-01-11       Impact factor: 16.971

6.  The kfrA gene is the first in a tricistronic operon required for survival of IncP-1 plasmid R751.

Authors:  Malgorzata Adamczyk; Patrycja Dolowy; Michal Jonczyk; Christopher M Thomas; Grazyna Jagura-Burdzy
Journal:  Microbiology       Date:  2006-06       Impact factor: 2.777

7.  Identification and characterization of Tn4653, a transposon covering the toluene transposon Tn4651 on TOL plasmid pWW0.

Authors:  M Tsuda; T Iino
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8.  Characterization of the replication, maintenance, and transfer features of the IncP-7 plasmid pCAR1, which carries genes involved in carbazole and dioxin degradation.

Authors:  Masaki Shintani; Hirokazu Yano; Hiroshi Habe; Toshio Omori; Hisakazu Yamane; Masataka Tsuda; Hideaki Nojiri
Journal:  Appl Environ Microbiol       Date:  2006-05       Impact factor: 4.792

9.  Analysis of the multimer resolution system encoded by the parCBA operon of broad-host-range plasmid RP4.

Authors:  L Eberl; C S Kristensen; M Givskov; E Grohmann; M Gerlitz; H Schwab
Journal:  Mol Microbiol       Date:  1994-04       Impact factor: 3.501

10.  Structure-based prediction of insertion-site preferences of transposons into chromosomes.

Authors:  Aron M Geurts; Christopher S Hackett; Jason B Bell; Tracy L Bergemann; Lara S Collier; Corey M Carlson; David A Largaespada; Perry B Hackett
Journal:  Nucleic Acids Res       Date:  2006-05-22       Impact factor: 16.971

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  11 in total

1.  Tn502 and Tn512 are res site hunters that provide evidence of resolvase-independent transposition to random sites.

Authors:  Steve Petrovski; Vilma A Stanisich
Journal:  J Bacteriol       Date:  2010-01-29       Impact factor: 3.490

2.  Diversification of broad host range plasmids correlates with the presence of antibiotic resistance genes.

Authors:  Xiaobin Li; Yafei Wang; Celeste J Brown; Fei Yao; Yong Jiang; Eva M Top; Hui Li
Journal:  FEMS Microbiol Ecol       Date:  2015-12-02       Impact factor: 4.194

3.  Spatial structure and nutrients promote invasion of IncP-1 plasmids in bacterial populations.

Authors:  Randal E Fox; Xue Zhong; Stephen M Krone; Eva M Top
Journal:  ISME J       Date:  2008-06-05       Impact factor: 10.302

4.  Comparative genomics of pAKD4, the prototype IncP-1delta plasmid with a complete backbone.

Authors:  Diya Sen; Hirokazu Yano; Haruo Suzuki; Jaroslaw E Król; Linda Rogers; Celeste J Brown; Eva M Top
Journal:  Plasmid       Date:  2009-12-16       Impact factor: 3.466

5.  Long-Range PCR Reveals the Genetic Cargo of IncP-1 Plasmids in the Complex Microbial Community of an On-Farm Biopurification System Treating Pesticide-Contaminated Wastewater.

Authors:  Vincent Dunon; Peter N Holmsgaard; Simone Dealtry; Rob Lavigne; Søren J Sørensen; Kornelia Smalla; Eva M Top; Dirk Springael
Journal:  Appl Environ Microbiol       Date:  2021-12-08       Impact factor: 5.005

6.  Unintentional Genomic Changes Endow Cupriavidus metallidurans with an Augmented Heavy-Metal Resistance.

Authors:  Felipe A Millacura; Paul J Janssen; Pieter Monsieurs; Ann Janssen; Ann Provoost; Rob Van Houdt; Luis A Rojas
Journal:  Genes (Basel)       Date:  2018-11-13       Impact factor: 4.096

7.  Sequences of two related multiple antibiotic resistance virulence plasmids sharing a unique IS26-related molecular signature isolated from different Escherichia coli pathotypes from different hosts.

Authors:  Carola Venturini; Karl A Hassan; Piklu Roy Chowdhury; Ian T Paulsen; Mark J Walker; Steven P Djordjevic
Journal:  PLoS One       Date:  2013-11-04       Impact factor: 3.240

8.  The Complete Sequences and Ecological Roles of Two IncP-1β Plasmids, pHB44 and pBS64, Isolated from the Mycosphere of Laccaria proxima.

Authors:  Miaozhi Zhang; Jolanda K Brons; Jan Dirk van Elsas
Journal:  Front Microbiol       Date:  2016-06-21       Impact factor: 5.640

9.  Novel Self-Transmissible and Broad-Host-Range Plasmids Exogenously Captured From Anaerobic Granules or Cow Manure.

Authors:  Kosuke Yanagiya; Yoshiaki Maejima; Hiroki Nakata; Maho Tokuda; Ryota Moriuchi; Hideo Dohra; Kengo Inoue; Moriya Ohkuma; Kazuhide Kimbara; Masaki Shintani
Journal:  Front Microbiol       Date:  2018-11-06       Impact factor: 5.640

10.  Transposon Mutagenesis in Chlamydia trachomatis Identifies CT339 as a ComEC Homolog Important for DNA Uptake and Lateral Gene Transfer.

Authors:  Scott D LaBrie; Zoë E Dimond; Kelly S Harrison; Srishti Baid; Jason Wickstrum; Robert J Suchland; P Scott Hefty
Journal:  mBio       Date:  2019-08-06       Impact factor: 7.867

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