Literature DB >> 15690105

Large-scale general collection of wild-plant DNA in Mustang, Nepal.

Hirokazu Tsukaya1, Yu Iokawa, Makiko Kondo, Hideaki Ohba.   

Abstract

The deposit of DNA samples of wild plants that correspond to voucher specimens is highly informative and greatly enhances the value of the herbarium specimens. The Society of Himalayan Botany (SHB), Tokyo, has assembled general collections of flowering plants of the Sino-Himalayan region for more than 40 years. In a trial of the collection of these types of bioresources for use in basic research, we adopted FTA cards, which have recently been used for large-scale collection of DNA of humans, microorganisms and viruses, for the general collection of DNA samples of wild plants during a botanical expedition in Mustang, Nepal, in 2003. Three hundred and fifty-five plant specimens from Mustang, Nepal, were collected along with the corresponding DNA samples. Examination of the quality of the DNA samples by PCR demonstrated the utility of the collection system. The identification of all of the specimens collected, as well as data from the specimens, will be presented on the Flora of Nepal Database website (http://ti.um.u-tokyo.ac.jp/default.htm), which is open to the public. The DNA resources will be identified on the website and distributed openly by the SHB to researchers worldwide for basic research.

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Year:  2005        PMID: 15690105     DOI: 10.1007/s10265-005-0196-4

Source DB:  PubMed          Journal:  J Plant Res        ISSN: 0918-9440            Impact factor:   2.629


  8 in total

1.  Detection of plant genes using a rapid, nonorganic DNA purification method.

Authors:  J J Lin; R Fleming; J Kuo; B F Matthews; J A Saunders
Journal:  Biotechniques       Date:  2000-02       Impact factor: 1.993

2.  Detection of Bacillus spores using PCR and FTA filters.

Authors:  Keith A Lampel; Deanne Dyer; Leroy Kornegay; Palmer A Orlandi
Journal:  J Food Prot       Date:  2004-05       Impact factor: 2.077

3.  Two rare novel polymorphisms in the D8S1179 and D13S317 markers and method to mitigate their impact on human identification.

Authors:  Shawn W Forrest; Timothy D Kupferschmid; Brant C Hendrickson; Thaddeus Judkins; Daniel J Petersen; Thomas Scholl
Journal:  Croat Med J       Date:  2004-08       Impact factor: 1.351

4.  Gene flow between Impatiens radicans and I. javensis (Balsaminaceae) in Gunung Pangrango, central Java, Indonesia.

Authors:  Hirokazu Tsukaya
Journal:  Am J Bot       Date:  2004-12       Impact factor: 3.844

5.  Molecular phylogenetics of Diseae (Orchidaceae): a contribution from nuclear ribosomal ITS sequences.

Authors:  E J Douzery; A M Pridgeon; P Kores; H P Linder; H Kurzweil; M W Chase
Journal:  Am J Bot       Date:  1999-06       Impact factor: 3.844

6.  Hybridization and introgression between Callicarpa japonica and C. mollis (Verbenaceae) in central Japan, as inferred from nuclear and chloroplast DNA sequences.

Authors:  Hirokazu Tsukaya; Tatsuya Fukuda; Jun Yokoyama
Journal:  Mol Ecol       Date:  2003-11       Impact factor: 6.185

7.  Persistence of human immunodeficiency virus type 1 subtype B DNA in dried-blood samples on FTA filter paper.

Authors:  Chung-Chen Li; Ingrid A Beck; Kristy D Seidel; Lisa M Frenkel
Journal:  J Clin Microbiol       Date:  2004-08       Impact factor: 5.948

8.  Evaluation of DNA extraction and PCR methods for detection of Enterocytozoon bienuesi in stool specimens.

Authors:  Ittisak Subrungruang; Mathirut Mungthin; Porntip Chavalitshewinkoon-Petmitr; Ram Rangsin; Tawee Naaglor; Saovanee Leelayoova
Journal:  J Clin Microbiol       Date:  2004-08       Impact factor: 5.948

  8 in total
  4 in total

1.  A hypothesis on the origin of genetic heterozygosity in diploids and triploids in Japanese Cayratia japonica species complex (Vitaceae).

Authors:  Hirokazu Tsukaya; Naoko Ishikawa; Hiroshi Okada
Journal:  J Plant Res       Date:  2011-12-27       Impact factor: 2.629

2.  Arundina graminifolia var. revoluta (Arethuseae, Orchidaceae) has fern-type rheophyte characteristics in the leaves.

Authors:  Eri Yorifuji; Naoko Ishikawa; Hiroshi Okada; Hirokazu Tsukaya
Journal:  J Plant Res       Date:  2014-12-14       Impact factor: 2.629

3.  Taxonomic status of Monotropastrum humile, with special reference to M. humile var. glaberrimum (Ericaceae, Monotropoideae).

Authors:  Hirokazu Tsukaya; Jun Yokoyama; Ryoko Imaichi; Hideaki Ohba
Journal:  J Plant Res       Date:  2008-04-04       Impact factor: 2.629

Review 4.  DNA banking for plant breeding, biotechnology and biodiversity evaluation.

Authors:  Trevor R Hodkinson; Stephen Waldren; John A N Parnell; Colin T Kelleher; Karine Salamin; Nicolas Salamin
Journal:  J Plant Res       Date:  2007-02-02       Impact factor: 3.000

  4 in total

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