Literature DB >> 17266324

Synthesis and analysis of substrate analogues for UDP-galactopyranose mutase: implication for an oxocarbenium ion intermediate in the catalytic mechanism.

Kenji Itoh1, Zhishu Huang, Hung-wen Liu.   

Abstract

[reaction: see text] UDP-D-galactofuranose (2), which is essential for both cell growth and virulence in many pathogenic microorganisms, is converted from UDP-D-galactopyranose (UDP-Galp, 1) by the flavin adenine dinucleotide (FAD)-dependent enzyme UDP-galactopyranose mutase (UGM). Here, we report the synthesis of UDP-GalOH (13) and show it as an inhibitor for UGM with a binding affinity similar to that of 1. These results are more consistent with a mechanism involving an oxocarbenium ion intermediate in UGM catalysis.

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Year:  2007        PMID: 17266324      PMCID: PMC2515276          DOI: 10.1021/ol0631408

Source DB:  PubMed          Journal:  Org Lett        ISSN: 1523-7052            Impact factor:   6.005


  23 in total

1.  The 2.0 A structure of human hypoxanthine-guanine phosphoribosyltransferase in complex with a transition-state analog inhibitor.

Authors:  W Shi; C M Li; P C Tyler; R H Furneaux; C Grubmeyer; V L Schramm; S C Almo
Journal:  Nat Struct Biol       Date:  1999-06

2.  Identification of inhibitors for UDP-galactopyranose mutase.

Authors:  Michelle Soltero-Higgin; Erin E Carlson; John H Phillips; Laura L Kiessling
Journal:  J Am Chem Soc       Date:  2004-09-01       Impact factor: 15.419

Review 3.  Galactofuranose metabolism: a potential target for antimicrobial chemotherapy.

Authors:  L L Pedersen; S J Turco
Journal:  Cell Mol Life Sci       Date:  2003-02       Impact factor: 9.261

4.  Kinetic isotope effect characterization of the transition state for oxidized nicotinamide adenine dinucleotide hydrolysis by pertussis toxin.

Authors:  J Scheuring; V L Schramm
Journal:  Biochemistry       Date:  1997-04-15       Impact factor: 3.162

5.  Cell wall core galactofuran synthesis is essential for growth of mycobacteria.

Authors:  F Pan; M Jackson; Y Ma; M McNeil
Journal:  J Bacteriol       Date:  2001-07       Impact factor: 3.490

6.  UDP-galactopyranose mutase has a novel structure and mechanism.

Authors:  D A Sanders; A G Staines; S A McMahon; M R McNeil; C Whitfield; J H Naismith
Journal:  Nat Struct Biol       Date:  2001-10

7.  1H-Tetrazole as Catalyst in Phosphomorpholidate Coupling Reactions: Efficient Synthesis of GDP-Fucose, GDP-Mannose, and UDP-Galactose.

Authors:  Valentin Wittmann; Chi-Huey Wong
Journal:  J Org Chem       Date:  1997-04-04       Impact factor: 4.354

8.  Potentiometric analysis of UDP-galactopyranose mutase: stabilization of the flavosemiquinone by substrate.

Authors:  Stephen W B Fullerton; Simon Daff; David A R Sanders; W John Ingledew; Chris Whitfield; Stephen K Chapman; James H Naismith
Journal:  Biochemistry       Date:  2003-02-25       Impact factor: 3.162

9.  An oxocarbenium-ion intermediate of a ribozyme reaction indicated by kinetic isotope effects.

Authors:  Peter J Unrau; David P Bartel
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-10       Impact factor: 11.205

10.  Amidrazone analogues of D-ribofuranose as transition-state inhibitors of nucleoside hydrolase.

Authors:  M Boutellier; B A Horenstein; A Semenyaka; V L Schramm; B Ganem
Journal:  Biochemistry       Date:  1994-04-05       Impact factor: 3.162

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  14 in total

Review 1.  The structural biology of enzymes involved in natural product glycosylation.

Authors:  Shanteri Singh; George N Phillips; Jon S Thorson
Journal:  Nat Prod Rep       Date:  2012-06-12       Impact factor: 13.423

2.  Characterization of a bifunctional pyranose-furanose mutase from Campylobacter jejuni 11168.

Authors:  Myles B Poulin; Harald Nothaft; Isabelle Hug; Mario F Feldman; Christine M Szymanski; Todd L Lowary
Journal:  J Biol Chem       Date:  2009-11-03       Impact factor: 5.157

3.  Nucleophilic participation of reduced flavin coenzyme in mechanism of UDP-galactopyranose mutase.

Authors:  He G Sun; Mark W Ruszczycky; Wei-Chen Chang; Christopher J Thibodeaux; Hung-Wen Liu
Journal:  J Biol Chem       Date:  2011-12-20       Impact factor: 5.157

4.  Synthetic UDP-furanoses as potent inhibitors of mycobacterial galactan biogenesis.

Authors:  Pauline Peltier; Martina Beláňová; Petronela Dianišková; Ruokun Zhou; Ruixiang Blake Zheng; Jean A Pearcey; Maju Joe; Patrick J Brennan; Caroline Nugier-Chauvin; Vincent Ferrières; Todd L Lowary; Richard Daniellou; Katarína Mikušová
Journal:  Chem Biol       Date:  2010-12-22

5.  Conformational Control of UDP-Galactopyranose Mutase Inhibition.

Authors:  Kittikhun Wangkanont; Valerie J Winton; Katrina T Forest; Laura L Kiessling
Journal:  Biochemistry       Date:  2017-07-20       Impact factor: 3.162

Review 6.  Structure, mechanism, and dynamics of UDP-galactopyranose mutase.

Authors:  John J Tanner; Leonardo Boechi; J Andrew McCammon; Pablo Sobrado
Journal:  Arch Biochem Biophys       Date:  2013-10-03       Impact factor: 4.013

7.  Virtual Screening for UDP-Galactopyranose Mutase Ligands Identifies a New Class of Antimycobacterial Agents.

Authors:  Virginia A Kincaid; Nir London; Kittikhun Wangkanont; Darryl A Wesener; Sarah A Marcus; Annie Héroux; Lyudmila Nedyalkova; Adel M Talaat; Katrina T Forest; Brian K Shoichet; Laura L Kiessling
Journal:  ACS Chem Biol       Date:  2015-08-17       Impact factor: 5.100

8.  Ligand binding and substrate discrimination by UDP-galactopyranose mutase.

Authors:  Todd D Gruber; M Jack Borrok; William M Westler; Katrina T Forest; Laura L Kiessling
Journal:  J Mol Biol       Date:  2009-06-03       Impact factor: 5.469

9.  Potent ligands for prokaryotic UDP-galactopyranose mutase that exploit an enzyme subsite.

Authors:  Emily C Dykhuizen; Laura L Kiessling
Journal:  Org Lett       Date:  2009-01-01       Impact factor: 6.005

10.  Sigma S-dependent antioxidant defense protects stationary-phase Escherichia coli against the bactericidal antibiotic gentamicin.

Authors:  Jing-Hung Wang; Rachna Singh; Michael Benoit; Mimi Keyhan; Matthew Sylvester; Michael Hsieh; Anuradha Thathireddy; Yi-Ju Hsieh; A C Matin
Journal:  Antimicrob Agents Chemother       Date:  2014-07-28       Impact factor: 5.191

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