Literature DB >> 17263421

UltraSOFAST HMQC NMR and the repetitive acquisition of 2D protein spectra at Hz rates.

Maayan Gal1, Paul Schanda, Bernhard Brutscher, Lucio Frydman.   

Abstract

Following unidirectional biophysical events such as the folding of proteins or the equilibration of binding interactions, requires experimental methods that yield information at both atomic-level resolution and at high repetition rates. Toward this end a number of different approaches enabling the rapid acquisition of 2D NMR spectra have been recently introduced, including spatially encoded "ultrafast" 2D NMR spectroscopy and SOFAST HMQC NMR. Whereas the former accelerates acquisitions by reducing the number of scans that are necessary for completing arbitrary 2D NMR experiments, the latter operates by reducing the delay between consecutive scans while preserving sensitivity. Given the complementarities between these two approaches it seems natural to combine them into a single tool, enabling the acquisition of full 2D protein NMR spectra at high repetition rates. We demonstrate here this capability with the introduction of "ultraSOFAST" HMQC NMR, a spatially encoded and relaxation-optimized approach that can provide 2D protein correlation spectra at approximately 1 s repetition rates for samples in the approximately 2 mM concentration range. The principles, relative advantages, and current limitations of this new approach are discussed, and its application is exemplified with a study of the fast hydrogen-deuterium exchange characterizing amide sites in Ubiquitin.

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Year:  2007        PMID: 17263421     DOI: 10.1021/ja066915g

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  27 in total

1.  Real-time multidimensional NMR follows RNA folding with second resolution.

Authors:  Mi-Kyung Lee; Maayan Gal; Lucio Frydman; Gabriele Varani
Journal:  Proc Natl Acad Sci U S A       Date:  2010-05-03       Impact factor: 11.205

2.  Spatially encoded strategies in the execution of biomolecular-oriented 3D NMR experiments.

Authors:  Mor Mishkovsky; Maayan Gal; Lucio Frydman
Journal:  J Biomol NMR       Date:  2007-10-17       Impact factor: 2.835

3.  Highly automated protein backbone resonance assignment within a few hours: the "BATCH" strategy and software package.

Authors:  Ewen Lescop; Bernhard Brutscher
Journal:  J Biomol NMR       Date:  2009-04-15       Impact factor: 2.835

4.  An improved ultrafast 2D NMR experiment: towards atom-resolved real-time studies of protein kinetics at multi-Hz rates.

Authors:  Maayan Gal; Thomas Kern; Paul Schanda; Lucio Frydman; Bernhard Brutscher
Journal:  J Biomol NMR       Date:  2008-11-04       Impact factor: 2.835

Review 5.  Sensitivity enhancement in solution NMR: emerging ideas and new frontiers.

Authors:  Jung Ho Lee; Yusuke Okuno; Silvia Cavagnero
Journal:  J Magn Reson       Date:  2014-04       Impact factor: 2.229

6.  Automatic assignment of protein backbone resonances by direct spectrum inspection in targeted acquisition of NMR data.

Authors:  Leo E Wong; James E Masse; Victor Jaravine; Vladislav Orekhov; Konstantin Pervushin
Journal:  J Biomol NMR       Date:  2008-09-11       Impact factor: 2.835

7.  Real-Time Analysis of Folding upon Binding of a Disordered Protein by Using Dissolution DNP NMR Spectroscopy.

Authors:  Mukundan Ragavan; Luigi I Iconaru; Cheon-Gil Park; Richard W Kriwacki; Christian Hilty
Journal:  Angew Chem Int Ed Engl       Date:  2017-05-16       Impact factor: 15.336

8.  Measuring hydrogen exchange in proteins by selective water saturation in (1)H- (15)N SOFAST/BEST-type experiments: advantages and limitations.

Authors:  Enrico Rennella; Zsofia Solyom; Bernhard Brutscher
Journal:  J Biomol NMR       Date:  2014-08-31       Impact factor: 2.835

9.  Effects of radiation damping for biomolecular NMR experiments in solution: a hemisphere concept for water suppression.

Authors:  Rieko Ishima
Journal:  Concepts Magn Reson Part A Bridg Educ Res       Date:  2016-03-10       Impact factor: 0.481

10.  High-precision frequency measurements: indispensable tools at the core of the molecular-level analysis of complex systems.

Authors:  N Hertkorn; C Ruecker; M Meringer; R Gugisch; M Frommberger; E M Perdue; M Witt; P Schmitt-Kopplin
Journal:  Anal Bioanal Chem       Date:  2007-10-09       Impact factor: 4.142

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