Literature DB >> 17261808

Protein ligand migration mapped by nonequilibrium 2D-IR exchange spectroscopy.

Jens Bredenbeck1, Jan Helbing, Karin Nienhaus, G Ulrich Nienhaus, Peter Hamm.   

Abstract

2D-IR exchange spectroscopy has been introduced recently to map chemical exchange networks in equilibrium with subpicosecond time resolution. Here, we demonstrate the generalization of 2D-IR exchange spectroscopy to nonequilibrium systems and its application to map light-triggered migration of ligands between different sites in a protein. Within picoseconds after a photodissociating laser pulse, carbon monoxide ligands relocate from their binding site A at the heme prosthetic group of myoglobin to a primary docking site B in the distal heme pocket. Multiple CO stretching bands are observed for the CO ligand in sites A and B, indicating that several distinct conformational substates of the myoglobin:ligand complex coexist in solution. Exchange cross-peaks between the bands associated with substates of heme-bound CO and photodissociated CO in the primary docking site reveal the substate connectivity at physiological temperature.

Entities:  

Mesh:

Substances:

Year:  2007        PMID: 17261808      PMCID: PMC1964829          DOI: 10.1073/pnas.0607758104

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  27 in total

1.  Theoretical investigation of infrared spectra and pocket dynamics of photodissociated carbonmonoxy myoglobin.

Authors:  David R Nutt; Markus Meuwly
Journal:  Biophys J       Date:  2003-12       Impact factor: 4.033

2.  Structural dynamics of myoglobin: effect of internal cavities on ligand migration and binding.

Authors:  Karin Nienhaus; Pengchi Deng; Jan M Kriegl; G Ulrich Nienhaus
Journal:  Biochemistry       Date:  2003-08-19       Impact factor: 3.162

3.  Myoglobin-CO substate structures and dynamics: multidimensional vibrational echoes and molecular dynamics simulations.

Authors:  Kusai A Merchant; W G Noid; Ryo Akiyama; Ilya J Finkelstein; Alexei Goun; Brian L McClain; Roger F Loring; M D Fayer
Journal:  J Am Chem Soc       Date:  2003-11-12       Impact factor: 15.419

4.  Chemical exchange 2D IR of hydrogen-bond making and breaking.

Authors:  Yung Sam Kim; Robin M Hochstrasser
Journal:  Proc Natl Acad Sci U S A       Date:  2005-07-22       Impact factor: 11.205

5.  Noise suppression in femtosecond mid-infrared light sources.

Authors:  P Hamm; R A Kaindl; J Stenger
Journal:  Opt Lett       Date:  2000-12-15       Impact factor: 3.776

6.  Ligand binding to heme proteins. VI. Interconversion of taxonomic substates in carbonmonoxymyoglobin.

Authors:  J B Johnson; D C Lamb; H Frauenfelder; J D Müller; B McMahon; G U Nienhaus; R D Young
Journal:  Biophys J       Date:  1996-09       Impact factor: 4.033

7.  Ligand binding to heme proteins: II. Transitions in the heme pocket of myoglobin.

Authors:  J R Mourant; D P Braunstein; K Chu; H Frauenfelder; G U Nienhaus; P Ormos; R D Young
Journal:  Biophys J       Date:  1993-10       Impact factor: 4.033

8.  Connection between the taxonomic substates and protonation of histidines 64 and 97 in carbonmonoxy myoglobin.

Authors:  J D Müller; B H McMahon; E Y Chien; S G Sligar; G U Nienhaus
Journal:  Biophys J       Date:  1999-08       Impact factor: 4.033

9.  Infrared spectroscopy of photodissociated carboxymyoglobin at low temperatures.

Authors:  J O Alben; D Beece; S F Bowne; W Doster; L Eisenstein; H Frauenfelder; D Good; J D McDonald; M C Marden; P P Moh; L Reinisch; A H Reynolds; E Shyamsunder; K T Yue
Journal:  Proc Natl Acad Sci U S A       Date:  1982-06       Impact factor: 11.205

10.  Crystal structures of CO-, deoxy- and met-myoglobins at various pH values.

Authors:  F Yang; G N Phillips
Journal:  J Mol Biol       Date:  1996-03-08       Impact factor: 5.469

View more
  21 in total

1.  Residue-specific vibrational echoes yield 3D structures of a transmembrane helix dimer.

Authors:  Amanda Remorino; Ivan V Korendovych; Yibing Wu; William F DeGrado; Robin M Hochstrasser
Journal:  Science       Date:  2011-06-03       Impact factor: 47.728

Review 2.  Vibrational Spectroscopic Map, Vibrational Spectroscopy, and Intermolecular Interaction.

Authors:  Carlos R Baiz; Bartosz Błasiak; Jens Bredenbeck; Minhaeng Cho; Jun-Ho Choi; Steven A Corcelli; Arend G Dijkstra; Chi-Jui Feng; Sean Garrett-Roe; Nien-Hui Ge; Magnus W D Hanson-Heine; Jonathan D Hirst; Thomas L C Jansen; Kijeong Kwac; Kevin J Kubarych; Casey H Londergan; Hiroaki Maekawa; Mike Reppert; Shinji Saito; Santanu Roy; James L Skinner; Gerhard Stock; John E Straub; Megan C Thielges; Keisuke Tominaga; Andrei Tokmakoff; Hajime Torii; Lu Wang; Lauren J Webb; Martin T Zanni
Journal:  Chem Rev       Date:  2020-06-29       Impact factor: 60.622

3.  Transient ligand docking sites in Cerebratulus lacteus mini-hemoglobin.

Authors:  Pengchi Deng; Karin Nienhaus; Pasquale Palladino; John S Olson; George Blouin; Luc Moens; Sylvia Dewilde; Eva Geuens; G Ulrich Nienhaus
Journal:  Gene       Date:  2007-04-29       Impact factor: 3.688

4.  Direct observation of ligand transfer and bond formation in cytochrome c oxidase by using mid-infrared chirped-pulse upconversion.

Authors:  Johanne Treuffet; Kevin J Kubarych; Jean-Christophe Lambry; Eric Pilet; Jean-Baptiste Masson; Jean-Louis Martin; Marten H Vos; Manuel Joffre; Antigoni Alexandrou
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-25       Impact factor: 11.205

5.  Two-dimensional spectroscopy at infrared and optical frequencies.

Authors:  Robin M Hochstrasser
Journal:  Proc Natl Acad Sci U S A       Date:  2007-07-30       Impact factor: 11.205

6.  Multidimensional ultrafast spectroscopy special feature: multidimensional ultrafast spectroscopy.

Authors:  Robin M Hochstrasser
Journal:  Proc Natl Acad Sci U S A       Date:  2007-08-27       Impact factor: 11.205

7.  Ligand migration and binding in the dimeric hemoglobin of Scapharca inaequivalvis.

Authors:  Karin Nienhaus; James E Knapp; Pasquale Palladino; William E Royer; G Ulrich Nienhaus
Journal:  Biochemistry       Date:  2007-11-15       Impact factor: 3.162

8.  Dynamic fluctuation of proteins watched in real time.

Authors:  Pál Ormos
Journal:  HFSP J       Date:  2008-10-16

9.  2D IR cross peaks reveal hydrogen-deuterium exchange with single residue specificity.

Authors:  Emily B Dunkelberger; Ann Marie Woys; Martin T Zanni
Journal:  J Phys Chem B       Date:  2013-05-23       Impact factor: 2.991

10.  An engineered heme-copper center in myoglobin: CO migration and binding.

Authors:  Karin Nienhaus; John S Olson; G Ulrich Nienhaus
Journal:  Biochim Biophys Acta       Date:  2013-02-28
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.