Literature DB >> 17895387

Direct observation of ligand transfer and bond formation in cytochrome c oxidase by using mid-infrared chirped-pulse upconversion.

Johanne Treuffet1, Kevin J Kubarych, Jean-Christophe Lambry, Eric Pilet, Jean-Baptiste Masson, Jean-Louis Martin, Marten H Vos, Manuel Joffre, Antigoni Alexandrou.   

Abstract

We have implemented the recently demonstrated technique of chirped-pulse upconversion of midinfrared femtosecond pulses into the visible in a visible pump-midinfrared probe experiment for high-resolution, high-sensitivity measurements over a broad spectral range. We have succeeded in time-resolving the CO ligand transfer process from the heme Fe to the neighboring Cu(B) atom in the bimetallic active site of mammalian cytochrome c oxidase, which was known to proceed in <1 ps, using the full CO vibrational signature of Fe-CO bond breaking and Cu(B)-CO bond formation. Our differential transmission results show a delayed onset of the appearance of the Cu(B)-bound species (200 fs), followed by a 450-fs exponential rise. Trajectories calculated by using molecular-dynamics simulations with a Morse potential for the Cu(B)-C interaction display a similar behavior. Both experimental and calculated data strongly suggest a ballistic contribution to the transfer process.

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Year:  2007        PMID: 17895387      PMCID: PMC2000433          DOI: 10.1073/pnas.0703279104

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  37 in total

1.  The Protein Data Bank.

Authors:  H M Berman; J Westbrook; Z Feng; G Gilliland; T N Bhat; H Weissig; I N Shindyalov; P E Bourne
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  CO vibration as a probe of ligand dissociation and transfer in myoglobin.

Authors:  T Polack; J P Ogilvie; S Franzen; M H Vos; M Joffre; J-L Martin; A Alexandrou
Journal:  Phys Rev Lett       Date:  2004-07-01       Impact factor: 9.161

3.  Ligand binding and protein relaxation in heme proteins: a room temperature analysis of NO geminate recombination.

Authors:  J W Petrich; J C Lambry; K Kuczera; M Karplus; C Poyart; J L Martin
Journal:  Biochemistry       Date:  1991-04-23       Impact factor: 3.162

4.  Initial electron donor and acceptor in isolated Photosystem II reaction centers identified with femtosecond mid-IR spectroscopy.

Authors:  Marie Louise Groot; Natalia P Pawlowicz; Luuk J G W van Wilderen; Jacques Breton; Ivo H M van Stokkum; Rienk van Grondelle
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-31       Impact factor: 11.205

5.  Heme photolysis occurs by ultrafast excited state metal-to-ring charge transfer.

Authors:  S Franzen; L Kiger; C Poyart; J L Martin
Journal:  Biophys J       Date:  2001-05       Impact factor: 4.033

6.  Direct observations of ligand dynamics in hemoglobin by subpicosecond infrared spectroscopy.

Authors:  P A Anfinrud; C Han; R M Hochstrasser
Journal:  Proc Natl Acad Sci U S A       Date:  1989-11       Impact factor: 11.205

Review 7.  Nitric oxide and cytochrome oxidase: substrate, inhibitor or effector?

Authors:  Chris E Cooper
Journal:  Trends Biochem Sci       Date:  2002-01       Impact factor: 13.807

8.  The site and mechanism of dioxygen reduction in bovine heart cytochrome c oxidase.

Authors:  O Einarsdóttir; M G Choc; S Weldon; W S Caughey
Journal:  J Biol Chem       Date:  1988-09-25       Impact factor: 5.157

9.  Electron transfer between hemes in mammalian cytochrome c oxidase.

Authors:  Eric Pilet; Audrius Jasaitis; Ursula Liebl; Marten H Vos
Journal:  Proc Natl Acad Sci U S A       Date:  2004-11-08       Impact factor: 11.205

10.  Orientational distribution of CO before and after photolysis of MbCO and HbCO: a determination using time-resolved polarized Mid-IR spectroscopy.

Authors:  Manho Lim; Timothy A Jackson; Philip A Anfinrud
Journal:  J Am Chem Soc       Date:  2004-06-30       Impact factor: 15.419

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  7 in total

1.  Effective pumping proton collection facilitated by a copper site (CuB) of bovine heart cytochrome c oxidase, revealed by a newly developed time-resolved infrared system.

Authors:  Minoru Kubo; Satoru Nakashima; Satoru Yamaguchi; Takashi Ogura; Masao Mochizuki; Jiyoung Kang; Masaru Tateno; Kyoko Shinzawa-Itoh; Koji Kato; Shinya Yoshikawa
Journal:  J Biol Chem       Date:  2013-08-30       Impact factor: 5.157

2.  Methodological CASPT2 study of the valence excited states of an iron-porphyrin complex.

Authors:  Nadia Ben Amor; Adrien Soupart; Marie-Catherine Heitz
Journal:  J Mol Model       Date:  2017-02-04       Impact factor: 1.810

3.  Ultrafast dynamics of diatomic ligand binding to nitrophorin 4.

Authors:  Abdelkrim Benabbas; Xiong Ye; Minoru Kubo; Zhenyu Zhang; Estelle M Maes; William R Montfort; Paul M Champion
Journal:  J Am Chem Soc       Date:  2010-03-03       Impact factor: 15.419

4.  Carbon monoxide and nitrogen monoxide ligand dynamics in synthetic heme and heme-copper complex systems.

Authors:  Heather R Lucas; Gerald J Meyer; Kenneth D Karlin
Journal:  J Am Chem Soc       Date:  2009-10-07       Impact factor: 15.419

5.  Histidine Orientation Modulates the Structure and Dynamics of a de Novo Metalloenzyme Active Site.

Authors:  Matthew R Ross; Aaron M White; Fangting Yu; John T King; Vincent L Pecoraro; Kevin J Kubarych
Journal:  J Am Chem Soc       Date:  2015-08-06       Impact factor: 15.419

Review 6.  Synthetic Fe/Cu Complexes: Toward Understanding Heme-Copper Oxidase Structure and Function.

Authors:  Suzanne M Adam; Gayan B Wijeratne; Patrick J Rogler; Daniel E Diaz; David A Quist; Jeffrey J Liu; Kenneth D Karlin
Journal:  Chem Rev       Date:  2018-10-29       Impact factor: 60.622

7.  General strategy for the bioorthogonal incorporation of strongly absorbing, solvation-sensitive infrared probes into proteins.

Authors:  Ivan Peran; Tracey Oudenhoven; Ann Marie Woys; Matthew D Watson; Tianqi O Zhang; Isaac Carrico; Martin T Zanni; Daniel P Raleigh
Journal:  J Phys Chem B       Date:  2014-05-07       Impact factor: 2.991

  7 in total

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