Literature DB >> 17261512

Phylogenetic diversity of archaea and bacteria in the anoxic zone of a meromictic lake (Lake Pavin, France).

Anne-Catherine Lehours1, Paul Evans, Corinne Bardot, Keith Joblin, Fonty Gérard.   

Abstract

The compositions of archaeal and bacterial populations at different depths (60 m [mixolimnion-chemocline interface], 70 m [chemocline-subchemocline interface], 90 m, and 92 m [the water-sediment interface]) in the anoxic zone of the water column in Lake Pavin, a freshwater permanently stratified mountain lake in France, were determined. Phylogenetic trees were constructed from sequences to assess archaeal and bacterial diversity at the four sites.

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Year:  2007        PMID： 17261512      PMCID： PMC1828810          DOI： 10.1128/AEM.01490-06

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  18 in total

1.  Microvariation artifacts introduced by PCR and cloning of closely related 16S rRNA gene sequences.

Authors:  A G Speksnijder; G A Kowalchuk; S De Jong; E Kline; J R Stephen; H J Laanbroek
Journal:  Appl Environ Microbiol       Date:  2001-01       Impact factor: 4.792

2.  Community composition of marine bacterioplankton determined by 16S rRNA gene clone libraries and fluorescence in situ hybridization.

Authors:  M T Cottrell; D L Kirchman
Journal:  Appl Environ Microbiol       Date:  2000-12       Impact factor: 4.792

3.  Comparative genomic analysis of archaeal genotypic variants in a single population and in two different oceanic provinces.

Authors:  Oded Béjà; Eugene V Koonin; L Aravind; Lance T Taylor; Heidi Seitz; Jefferey L Stein; Daniel C Bensen; Robert A Feldman; Ronald V Swanson; Edward F DeLong
Journal:  Appl Environ Microbiol       Date:  2002-01       Impact factor: 4.792

4.  Recovery of novel bacterial diversity from a forested wetland impacted by reject coal.

Authors:  Jennifer E Brofft; J Vaun McArthur; Lawrence J Shimkets
Journal:  Environ Microbiol       Date:  2002-11       Impact factor: 5.491

5.  ARB: a software environment for sequence data.

Authors:  Wolfgang Ludwig; Oliver Strunk; Ralf Westram; Lothar Richter; Harald Meier; Arno Buchner; Tina Lai; Susanne Steppi; Gangolf Jobb; Wolfram Förster; Igor Brettske; Stefan Gerber; Anton W Ginhart; Oliver Gross; Silke Grumann; Stefan Hermann; Ralf Jost; Andreas König; Thomas Liss; Ralph Lüssmann; Michael May; Björn Nonhoff; Boris Reichel; Robert Strehlow; Alexandros Stamatakis; Norbert Stuckmann; Alexander Vilbig; Michael Lenke; Thomas Ludwig; Arndt Bode; Karl-Heinz Schleifer
Journal:  Nucleic Acids Res       Date:  2004-02-25       Impact factor: 16.971

6.  Environmental whole-genome amplification to access microbial populations in contaminated sediments.

Authors:  Carl B Abulencia; Denise L Wyborski; Joseph A Garcia; Mircea Podar; Wenqiong Chen; Sherman H Chang; Hwai W Chang; David Watson; Eoin L Brodie; Terry C Hazen; Martin Keller
Journal:  Appl Environ Microbiol       Date:  2006-05       Impact factor: 4.792

7.  Using ecological diversity measures with bacterial communities.

Authors:  Tom C J Hill; Kerry A Walsh; James A Harris; Bruce F Moffett
Journal:  FEMS Microbiol Ecol       Date:  2003-02-01       Impact factor: 4.194

8.  Phylogenetic analysis of an anaerobic, trichlorobenzene-transforming microbial consortium.

Authors:  F von Wintzingerode; B Selent; W Hegemann; U B Göbel
Journal:  Appl Environ Microbiol       Date:  1999-01       Impact factor: 4.792

9.  Microbial diversity in an in situ reactor system treating monochlorobenzene contaminated groundwater as revealed by 16S ribosomal DNA analysis.

Authors:  Albin Alfreider; Carsten Vogt; Wolfgang Babel
Journal:  Syst Appl Microbiol       Date:  2002-08       Impact factor: 4.022

10.  New screening software shows that most recent large 16S rRNA gene clone libraries contain chimeras.

Authors:  Kevin E Ashelford; Nadia A Chuzhanova; John C Fry; Antonia J Jones; Andrew J Weightman
Journal:  Appl Environ Microbiol       Date:  2006-09       Impact factor: 4.792
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  34 in total

1.  Genome and physiology of a model Epsilonproteobacterium responsible for sulfide detoxification in marine oxygen depletion zones.

Authors:  Jana Grote; Thomas Schott; Christian G Bruckner; Frank Oliver Glöckner; Günter Jost; Hanno Teeling; Matthias Labrenz; Klaus Jürgens
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-27       Impact factor: 11.205

2.  Unexpected and novel putative viruses in the sediments of a deep-dark permanently anoxic freshwater habitat.

Authors:  Guillaume Borrel; Jonathan Colombet; Agnès Robin; Anne-Catherine Lehours; David Prangishvili; Télesphore Sime-Ngando
Journal:  ISME J       Date:  2012-05-31       Impact factor: 10.302

3.  Identification of sulfur-cycle prokaryotes in a low-sulfate lake (Lake Pavin) using aprA and 16S rRNA gene markers.

Authors:  Corinne Biderre-Petit; Delphine Boucher; Jan Kuever; Patrick Alberic; Didier Jézéquel; Brigitte Chebance; Guillaume Borrel; Gérard Fonty; Pierre Peyret
Journal:  Microb Ecol       Date:  2010-11-25       Impact factor: 4.552

4.  Euxinic freshwater hypolimnia promote bacterial endemicity in continental areas.

Authors:  Albert Barberán; Emilio O Casamayor
Journal:  Microb Ecol       Date:  2010-11-24       Impact factor: 4.552

5.  Insights in the ecology and evolutionary history of the Miscellaneous Crenarchaeotic Group lineage.

Authors:  Mireia Fillol; Jean-Christophe Auguet; Emilio O Casamayor; Carles M Borrego
Journal:  ISME J       Date:  2015-08-18       Impact factor: 10.302

6.  Changes in bacterial and archaeal community structure and functional diversity along a geochemically variable soil profile.

Authors:  Colleen M Hansel; Scott Fendorf; Phillip M Jardine; Christopher A Francis
Journal:  Appl Environ Microbiol       Date:  2008-01-11       Impact factor: 4.792

7.  Diversity of bacterial community in freshwater of Woopo wetland.

Authors:  Keun Sik Baik; Seong Chan Park; Eun Mi Kim; Kyung Sook Bae; Jae-Hyung Ahn; Jong-Ok Ka; Jongsik Chun; Chi Nam Seong
Journal:  J Microbiol       Date:  2008-12-24       Impact factor: 3.422

8.  Microbial diversity of an anoxic zone of a hydroelectric power station reservoir in Brazilian Amazonia.

Authors:  Diego A Graças; Paulo R Miranda; Rafael A Baraúna; John A McCulloch; Rubens Ghilardi; Maria Paula C Schneider; Artur Silva
Journal:  Microb Ecol       Date:  2011-07-14       Impact factor: 4.552

9.  Community shift from phototrophic to chemotrophic sulfide oxidation following anoxic holomixis in a stratified seawater lake.

Authors:  Petra Pjevac; Marino Korlević; Jasmine S Berg; Elvira Bura-Nakić; Irena Ciglenečki; Rudolf Amann; Sandi Orlić
Journal:  Appl Environ Microbiol       Date:  2014-10-24       Impact factor: 4.792

10.  Taxonomic and functional metagenomic profiling of the microbial community in the anoxic sediment of a sub-saline shallow lake (Laguna de Carrizo, Central Spain).

Authors:  Manuel Ferrer; María-Eugenia Guazzaroni; Michael Richter; Adela García-Salamanca; Pablo Yarza; Ana Suárez-Suárez; Jennifer Solano; María Alcaide; Pieter van Dillewijn; Maria Antonia Molina-Henares; Nieves López-Cortés; Yamal Al-Ramahi; Carmen Guerrero; Alejandro Acosta; Laura I de Eugenio; Virginia Martínez; Silvia Marques; Fernando Rojo; Eduardo Santero; Olga Genilloud; Julian Pérez-Pérez; Ramón Rosselló-Móra; Juan Luis Ramos
Journal:  Microb Ecol       Date:  2011-07-07       Impact factor: 4.552
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