Literature DB >> 17260972

A pre-steady state analysis of ligand binding to human glucokinase: evidence for a preexisting equilibrium.

Young B Kim1, Stephen S Kalinowski, Jovita Marcinkeviciene.   

Abstract

Cooperativity with glucose is a key feature of human glucokinase (GK), allowing its crucial role as a glucose sensor in hepatic and pancreatic cells. We studied the changes in enzyme intrinsic tryptophan fluorescence induced by binding of different ligands to this monomeric enzyme using stopped-flow and equilibrium binding methods. Glucose binding data under pre-steady state conditions suggest that the free enzyme in solution is in a preexisting equilibrium between at least two conformers (super-open and open) which differ in their affinity for glucose (Kd* = 0.17 +/- 0.02 mM and Kd = 73 +/- 18 mM). Increasing the glucose concentration changes the ratio of the two conformers, thus yielding an apparent Kd of 3 mM (different from a Km of 7-10 mM). The rates of conformational transitions of free and GK complexed with sugar are slow and during catalysis are most likely affected by ATP binding, phosphate transfer, and product release steps to allow the kcat to be 60 s-1. The ATP analogue PNP-AMP binds to free GK (super-open) and GK-glucose (open) complexes with comparable affinities (Kd = 0.23 +/- 0.02 and 0.19 +/- 0.08 mM, respectively). However, cooperativity with PNP-AMP observed under equilibrium binding conditions in the presence of glucose (Hill slope of 1.6) is indicative of further complex tightening to the closed conformation. Another physiological modulator (inhibitor), palmitoyl-CoA, binds to GK with similar characteristics, suggesting that conformational changes induced upon ligand binding are not restricted by an active site ligand. In conclusion, our data support control of GK activity and Km through the ratio of distinct conformers (super-open, open, and closed) through either substrate or other ligand binding and/or dissociation.

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Year:  2007        PMID: 17260972     DOI: 10.1021/bi0617308

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  26 in total

1.  Mutational analysis of allosteric activation and inhibition of glucokinase.

Authors:  Bogumil Zelent; Stella Odili; Carol Buettger; Dorothy K Zelent; Pan Chen; Deborah Fenner; Joseph Bass; Charles Stanley; Monique Laberge; Jane M Vanderkooi; Ramakanth Sarabu; Joseph Grimsby; Franz M Matschinsky
Journal:  Biochem J       Date:  2011-12-01       Impact factor: 3.857

2.  Conformational selection or induced fit? A critical appraisal of the kinetic mechanism.

Authors:  Austin D Vogt; Enrico Di Cera
Journal:  Biochemistry       Date:  2012-07-16       Impact factor: 3.162

3.  Discrimination between conformational selection and induced fit protein-ligand binding using Integrated Global Fit analysis.

Authors:  Franz-Josef Meyer-Almes
Journal:  Eur Biophys J       Date:  2015-11-04       Impact factor: 1.733

4.  Metals affect the structure and activity of human plasminogen activator inhibitor-1. II. Binding affinity and conformational changes.

Authors:  Lawrence C Thompson; Sumit Goswami; Cynthia B Peterson
Journal:  Protein Sci       Date:  2011-02       Impact factor: 6.725

5.  Determinants of human glucokinase activation and implications for small molecule allosteric control.

Authors:  Quinn Li; Lokesh Gakhar; M Ashley Spies
Journal:  Biochim Biophys Acta Gen Subj       Date:  2018-06-06       Impact factor: 3.770

Review 6.  Essential role of conformational selection in ligand binding.

Authors:  Austin D Vogt; Nicola Pozzi; Zhiwei Chen; Enrico Di Cera
Journal:  Biophys Chem       Date:  2013-09-25       Impact factor: 2.352

Review 7.  Conformational selection in protein binding and function.

Authors:  Thomas R Weikl; Fabian Paul
Journal:  Protein Sci       Date:  2014-09-06       Impact factor: 6.725

8.  Tryptophan Fluorescence Yields and Lifetimes as a Probe of Conformational Changes in Human Glucokinase.

Authors:  Bogumil Zelent; Chris Bialas; Ignacy Gryczynski; Pan Chen; Rahul Chib; Karina Lewerissa; Maria G Corradini; Richard D Ludescher; Jane M Vanderkooi; Franz M Matschinsky
Journal:  J Fluoresc       Date:  2017-04-22       Impact factor: 2.217

9.  Ligand depletion in vivo modulates the dynamic range and cooperativity of signal transduction.

Authors:  Stuart J Edelstein; Melanie I Stefan; Nicolas Le Novère
Journal:  PLoS One       Date:  2010-01-05       Impact factor: 3.240

Review 10.  Molecular physiology of mammalian glucokinase.

Authors:  P B Iynedjian
Journal:  Cell Mol Life Sci       Date:  2009-01       Impact factor: 9.261

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