Literature DB >> 17254853

Basis for the equilibrium constant in the interconversion of l-lysine and l-beta-lysine by lysine 2,3-aminomutase.

Dawei Chen1, Justinn Tanem, Perry A Frey.   

Abstract

l-beta-lysine and beta-glutamate are produced by the actions of lysine 2,3-aminomutase and glutamate 2,3-aminomutase, respectively. The pK(a) values have been titrimetrically measured and are for l-beta-lysine: pK(1)=3.25 (carboxyl), pK(2)=9.30 (beta-aminium), and pK(3)=10.5 (epsilon-aminium). For beta-glutamate the values are pK(1)=3.13 (carboxyl), pK(2)=3.73 (carboxyl), and pK(3)=10.1 (beta-aminium). The equilibrium constants for reactions of 2,3-aminomutases favor the beta-isomers. The pH and temperature dependencies of K(eq) have been measured for the reaction of lysine 2,3-aminomutase to determine the basis for preferential formation of beta-lysine. The value of K(eq) (8.5 at 37 degrees C) is independent of pH between pH 6 and pH 11; ruling out differences in pK-values as the basis for the equilibrium constant. The K(eq)-value is temperature-dependent and ranges from 10.9 at 4 degrees C to 6.8 at 65 degrees C. The linear van't Hoff plot shows the reaction to be enthalpy-driven, with DeltaH degrees =-1.4 kcal mol(-1) and DeltaS degrees =-0.25 cal deg(-1) mol(-1). Exothermicity is attributed to the greater strength of the bond C(beta)-N(beta) in l-beta-lysine than C(alpha)-N(alpha) in l-lysine, and this should hold for other amino acids.

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Year:  2006        PMID: 17254853      PMCID: PMC2045507          DOI: 10.1016/j.bbapap.2006.12.002

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  18 in total

1.  Lysine 2,3-aminomutase from Clostridium subterminale SB4: mass spectral characterization of cyanogen bromide-treated peptides and cloning, sequencing, and expression of the gene kamA in Escherichia coli.

Authors:  F J Ruzicka; K W Lieder; P A Frey
Journal:  J Bacteriol       Date:  2000-01       Impact factor: 3.490

2.  A novel lysine 2,3-aminomutase encoded by the yodO gene of bacillus subtilis: characterization and the observation of organic radical intermediates.

Authors:  D Chen; F J Ruzicka; P A Frey
Journal:  Biochem J       Date:  2000-06-15       Impact factor: 3.857

3.  The Additivity of the Energies of Normal Covalent Bonds.

Authors:  L Pauling; D M Yost
Journal:  Proc Natl Acad Sci U S A       Date:  1932-06       Impact factor: 11.205

4.  Glutamate 2,3-aminomutase: a new member of the radical SAM superfamily of enzymes.

Authors:  Frank J Ruzicka; Perry A Frey
Journal:  Biochim Biophys Acta       Date:  2006-11-23

5.  S-Adenosylmethionine-dependent reduction of lysine 2,3-aminomutase and observation of the catalytically functional iron-sulfur centers by electron paramagnetic resonance.

Authors:  K W Lieder; S Booker; F J Ruzicka; H Beinert; G H Reed; P A Frey
Journal:  Biochemistry       Date:  1998-02-24       Impact factor: 3.162

6.  Biosynthesis of viomycin. II. Origin of beta-lysine and viomycidine.

Authors:  J H Carter; R H Du Bus; J R Dyer; J C Floyd; K C Rice; P D Shaw
Journal:  Biochemistry       Date:  1974-03-12       Impact factor: 3.162

7.  The x-ray crystal structure of lysine-2,3-aminomutase from Clostridium subterminale.

Authors:  Bryan W Lepore; Frank J Ruzicka; Perry A Frey; Dagmar Ringe
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-15       Impact factor: 11.205

8.  Formation and stability of enolates of acetamide and acetate anion: an Eigen plot for proton transfer at alpha-carbonyl carbon.

Authors:  John P Richard; Glenn Williams; AnnMarie C O'Donoghue; Tina L Amyes
Journal:  J Am Chem Soc       Date:  2002-03-27       Impact factor: 15.419

9.  Metal cofactors of lysine-2,3-aminomutase.

Authors:  R M Petrovich; F J Ruzicka; G H Reed; P A Frey
Journal:  J Biol Chem       Date:  1991-04-25       Impact factor: 5.157

10.  Amino acid analysis by HPLC: optimized conditions for chromatography of phenylthiocarbamyl derivatives.

Authors:  R F Ebert
Journal:  Anal Biochem       Date:  1986-05-01       Impact factor: 3.365

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  2 in total

1.  Glutamate 2,3-aminomutase: a new member of the radical SAM superfamily of enzymes.

Authors:  Frank J Ruzicka; Perry A Frey
Journal:  Biochim Biophys Acta       Date:  2006-11-23

2.  Kinetic and spectroscopic evidence of negative cooperativity in the action of lysine 2,3-aminomutase.

Authors:  Frank J Ruzicka; Perry A Frey
Journal:  J Phys Chem B       Date:  2010-07-07       Impact factor: 2.991

  2 in total

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