Literature DB >> 17253725

Alignment-based approach for durable data storage into living organisms.

Nozomu Yachie1, Kazuhide Sekiyama, Junichi Sugahara, Yoshiaki Ohashi, Masaru Tomita.   

Abstract

The practical realization of DNA data storage is a major scientific goal. Here we introduce a simple, flexible, and robust data storage and retrieval method based on sequence alignment of the genomic DNA of living organisms. Duplicated data encoded by different oligonucleotide sequences was inserted redundantly into multiple loci of the Bacillus subtilis genome. Multiple alignment of the bit data sequences decoded by B. subtilis genome sequences enabled the retrieval of stable and compact data without the need for template DNA, parity checks, or error-correcting algorithms. Combined with the computational simulation of data retrieval from mutated message DNA, a practical use of this alignment-based method is discussed.

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Year:  2007        PMID: 17253725     DOI: 10.1021/bp060261y

Source DB:  PubMed          Journal:  Biotechnol Prog        ISSN: 1520-6033


  9 in total

Review 1.  Trends to store digital data in DNA: an overview.

Authors:  Fatima Akram; Ikram Ul Haq; Haider Ali; Aiman Tahir Laghari
Journal:  Mol Biol Rep       Date:  2018-08-02       Impact factor: 2.316

2.  InfoBiology by printed arrays of microorganism colonies for timed and on-demand release of messages.

Authors:  Manuel A Palacios; Elena Benito-Peña; Mael Manesse; Aaron D Mazzeo; Christopher N Lafratta; George M Whitesides; David R Walt
Journal:  Proc Natl Acad Sci U S A       Date:  2011-09-26       Impact factor: 11.205

Review 3.  DNA as a digital information storage device: hope or hype?

Authors:  Darshan Panda; Kutubuddin Ali Molla; Mirza Jainul Baig; Alaka Swain; Deeptirekha Behera; Manaswini Dash
Journal:  3 Biotech       Date:  2018-05-04       Impact factor: 2.406

4.  Fractal construction of constrained code words for DNA storage systems.

Authors:  Hannah F Löchel; Marius Welzel; Georges Hattab; Anne-Christin Hauschild; Dominik Heider
Journal:  Nucleic Acids Res       Date:  2022-03-21       Impact factor: 16.971

5.  Stabilizing synthetic data in the DNA of living organisms.

Authors:  Nozomu Yachie; Yoshiaki Ohashi; Masaru Tomita
Journal:  Syst Synth Biol       Date:  2008-12-13

Review 6.  The Essential Component in DNA-Based Information Storage System: Robust Error-Tolerating Module.

Authors:  Aldrin Kay-Yuen Yim; Allen Chi-Shing Yu; Jing-Woei Li; Ada In-Chun Wong; Jacky F C Loo; King Ming Chan; S K Kong; Kevin Y Yip; Ting-Fung Chan
Journal:  Front Bioeng Biotechnol       Date:  2014-11-06

Review 7.  New Trends of Digital Data Storage in DNA.

Authors:  Pavani Yashodha De Silva; Gamage Upeksha Ganegoda
Journal:  Biomed Res Int       Date:  2016-09-05       Impact factor: 3.411

8.  BioCode: two biologically compatible Algorithms for embedding data in non-coding and coding regions of DNA.

Authors:  David Haughton; Félix Balado
Journal:  BMC Bioinformatics       Date:  2013-04-09       Impact factor: 3.169

Review 9.  Bacterial computing: a form of natural computing and its applications.

Authors:  Rafael Lahoz-Beltra; Jorge Navarro; Pedro C Marijuán
Journal:  Front Microbiol       Date:  2014-03-25       Impact factor: 5.640

  9 in total

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