Literature DB >> 34908135

Fractal construction of constrained code words for DNA storage systems.

Hannah F Löchel1, Marius Welzel1, Georges Hattab1, Anne-Christin Hauschild1, Dominik Heider1.   

Abstract

The use of complex biological molecules to solve computational problems is an emerging field at the interface between biology and computer science. There are two main categories in which biological molecules, especially DNA, are investigated as alternatives to silicon-based computer technologies. One is to use DNA as a storage medium, and the other is to use DNA for computing. Both strategies come with certain constraints. In the current study, we present a novel approach derived from chaos game representation for DNA to generate DNA code words that fulfill user-defined constraints, namely GC content, homopolymers, and undesired motifs, and thus, can be used to build codes for reliable DNA storage systems.
© The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research.

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Year:  2022        PMID: 34908135      PMCID: PMC8934655          DOI: 10.1093/nar/gkab1209

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


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  1 in total

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  1 in total

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