Literature DB >> 17245180

Combination of SELDI-TOF-MS and data mining provides early-stage response prediction for rectal tumors undergoing multimodal neoadjuvant therapy.

Fraser M Smith1, William M Gallagher, Edward Fox, Richard B Stephens, Elton Rexhepaj, Emanuel F Petricoin, Lance Liotta, M John Kennedy, John V Reynolds.   

Abstract

OBJECTIVE: We investigated whether proteomic analysis of the low molecular weight region of the serum proteome could predict histologic response of locally advanced rectal cancer to neoadjuvant radiochemotherapy (RCT). SUMMARY BACKGROUND DATA: Proteomic analysis of serum is emerging as a powerful new modality in cancer, in terms of both screening and monitoring response to treatment. No study has yet assessed its ability to predict and monitor the response of rectal cancer to RCT.
METHODS: Sequential serum samples from 20 patients undergoing RCT were prospectively collected. Time points sampled were as follows: pretreatment, 24/48 hours, 1 week, 2 weeks, 3 weeks, 5 weeks (last day of RCT), and presurgery. Response to treatment was measured using a 5-point tumor regression grade (TRG) based on the degree of residual tumor to fibrosis. All serum samples were analyzed in duplicate using surface-enhanced laser desorption/ionization-time of flight mass spectrometry (SELDI-TOF-MS). Support vector machine (SVM) analysis of spectra was used to generate a predictive algorithm for each time point based on proteins that were maximally differentially expressed between good and poor responders. This algorithm was then tested using leave-one-out cross validation.
RESULTS: In total, 230 spectra were generated representing all available time points from 9 good responders (TRG 1+2) and 11 poor responders (TRG 3-5). SVM analysis indicated that changes within the serum proteome at the 24/48 hours time point into treatment provided optimal classification accuracy. In more detail, a cohort of 14 protein peaks were identified that collectively differentiated between good and poor responders, with 87.5% sensitivity and 80% specificity.
CONCLUSIONS: Serum proteomic analysis may represent an early response predictor in multimodal treatment regimens of rectal cancer. These data suggest that this novel, minimally invasive modality may be a useful adjunct in the multimodal management of rectal cancer, and in the design of future clinical trials.

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Year:  2007        PMID: 17245180      PMCID: PMC1876990          DOI: 10.1097/01.sla.0000245577.68151.bd

Source DB:  PubMed          Journal:  Ann Surg        ISSN: 0003-4932            Impact factor:   12.969


  48 in total

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Authors:  U J Roblick; G Auer
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2.  Preoperative radiochemotherapy and sphincter-saving resection for T3 carcinomas of the lower third of the rectum.

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3.  Cost-effectiveness of preoperative radiotherapy in rectal cancer: results from the Swedish Rectal Cancer Trial.

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4.  Use of proteomic patterns in serum to identify ovarian cancer.

Authors:  Emanuel F Petricoin; Ali M Ardekani; Ben A Hitt; Peter J Levine; Vincent A Fusaro; Seth M Steinberg; Gordon B Mills; Charles Simone; David A Fishman; Elise C Kohn; Lance A Liotta
Journal:  Lancet       Date:  2002-02-16       Impact factor: 79.321

5.  Importance of tumor regression assessment in predicting the outcome in patients with locally advanced rectal carcinoma who are treated with preoperative radiotherapy.

Authors:  Hanifa Bouzourene; Fred T Bosman; Walter Seelentag; Maurice Matter; Philippe Coucke
Journal:  Cancer       Date:  2002-02-15       Impact factor: 6.860

6.  Apoptosis as a cellular predictor for histopathologic response to neoadjuvant radiochemotherapy in patients with rectal cancer.

Authors:  Claus Rödel; Gerhard G Grabenbauer; Thomas Papadopoulos; Marc Bigalke; Klaus Günther; Christoph Schick; Andrea Peters; Rolf Sauer; Franz Rödel
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7.  T-level downstaging and complete pathologic response after preoperative chemoradiation for advanced rectal cancer result in decreased recurrence and improved disease-free survival.

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Journal:  Cancer       Date:  2003-01-15       Impact factor: 6.860

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Journal:  Cancer J       Date:  2002 Nov-Dec       Impact factor: 3.360

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  19 in total

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Authors:  Nikhil Pawa; Tan Arulampalam; John D Norton
Journal:  Nat Rev Gastroenterol Hepatol       Date:  2011-11-01       Impact factor: 46.802

Review 2.  Challenges for biomarker discovery in body fluids using SELDI-TOF-MS.

Authors:  Muriel De Bock; Dominique de Seny; Marie-Alice Meuwis; Jean-Paul Chapelle; Edouard Louis; Michel Malaise; Marie-Paule Merville; Marianne Fillet
Journal:  J Biomed Biotechnol       Date:  2009-12-06

3.  Analysis of serum proteome profiles in nasopharyngeal carcinoma with different radiosensitivity.

Authors:  F Su; X Zhu; Z Liang; L Li; S Qu; X Liang; Q Wang; S Liang; L Chen
Journal:  Clin Transl Oncol       Date:  2013-05-14       Impact factor: 3.405

Review 4.  Mass spectrometry-based serum and plasma peptidome profiling for prediction of treatment outcome in patients with solid malignancies.

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5.  A comparison of methods for classifying clinical samples based on proteomics data: a case study for statistical and machine learning approaches.

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Review 6.  Proteomic strategies and challenges in tumor metastasis research.

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7.  Colorectal cancer progression correlates with upregulation of S100A11 expression in tumor tissues.

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8.  Analysis of post-operative changes in serum protein expression profiles from colorectal cancer patients by MALDI-TOF mass spectrometry: a pilot methodological study.

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Review 9.  Proteomic and metabolic prediction of response to therapy in gastrointestinal cancers.

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Journal:  Nat Clin Pract Gastroenterol Hepatol       Date:  2009-03

10.  Prediction of outcome of non-small cell lung cancer patients treated with chemotherapy and bortezomib by time-course MALDI-TOF-MS serum peptide profiling.

Authors:  Johannes Voortman; Thang V Pham; Jaco C Knol; Giuseppe Giaccone; Connie R Jimenez
Journal:  Proteome Sci       Date:  2009-09-03       Impact factor: 2.480

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