Literature DB >> 17240972

Mix-and-match riboswitches.

Colby D Stoddard1, Robert T Batey.   

Abstract

Riboswitches are noncoding RNA elements found in the 5'-untranslated region of messenger RNA (mRNA) that mediate gene expression in a cis fashion in the absence of protein. This common regulatory strategy in bacteria is achieved through the interplay of two distinct domains: an aptamer domain responsible for sensing intracellular concentrations of a specific metabolite and a domain containing a secondary structural switch directly controlling expression. In a recent study, riboswitches have been discovered that are capable of regulating transcription by using an RNA architecture mimicking a Boolean NOR logic gate. Tandem arrangement of elements that recognize S-adenosylmethionine and coenzyme B12 yields an mRNA that is only expressed when both metabolites are in low concentration in the cell.

Entities:  

Mesh:

Substances:

Year:  2006        PMID: 17240972     DOI: 10.1021/cb600458w

Source DB:  PubMed          Journal:  ACS Chem Biol        ISSN: 1554-8929            Impact factor:   5.100


  21 in total

1.  Guanine riboswitch variants from Mesoplasma florum selectively recognize 2'-deoxyguanosine.

Authors:  Jane N Kim; Adam Roth; Ronald R Breaker
Journal:  Proc Natl Acad Sci U S A       Date:  2007-10-02       Impact factor: 11.205

Review 2.  Harnessing nature's toolbox: regulatory elements for synthetic biology.

Authors:  Patrick M Boyle; Pamela A Silver
Journal:  J R Soc Interface       Date:  2009-03-04       Impact factor: 4.118

Review 3.  Parts plus pipes: synthetic biology approaches to metabolic engineering.

Authors:  Patrick M Boyle; Pamela A Silver
Journal:  Metab Eng       Date:  2011-10-25       Impact factor: 9.783

Review 4.  Prospects for riboswitch discovery and analysis.

Authors:  Ronald R Breaker
Journal:  Mol Cell       Date:  2011-09-16       Impact factor: 17.970

5.  A eubacterial riboswitch class that senses the coenzyme tetrahydrofolate.

Authors:  Tyler D Ames; Dmitry A Rodionov; Zasha Weinberg; Ronald R Breaker
Journal:  Chem Biol       Date:  2010-07-30

6.  The structure of a tetrahydrofolate-sensing riboswitch reveals two ligand binding sites in a single aptamer.

Authors:  Jeremiah J Trausch; Pablo Ceres; Francis E Reyes; Robert T Batey
Journal:  Structure       Date:  2011-09-08       Impact factor: 5.006

Review 7.  A switch in time: detailing the life of a riboswitch.

Authors:  Andrew D Garst; Robert T Batey
Journal:  Biochim Biophys Acta       Date:  2009-07-09

8.  Free state conformational sampling of the SAM-I riboswitch aptamer domain.

Authors:  Colby D Stoddard; Rebecca K Montange; Scott P Hennelly; Robert P Rambo; Karissa Y Sanbonmatsu; Robert T Batey
Journal:  Structure       Date:  2010-07-14       Impact factor: 5.006

9.  A variant riboswitch aptamer class for S-adenosylmethionine common in marine bacteria.

Authors:  Elena Poiata; Michelle M Meyer; Tyler D Ames; Ronald R Breaker
Journal:  RNA       Date:  2009-09-23       Impact factor: 4.942

Review 10.  Engineering ligand-responsive gene-control elements: lessons learned from natural riboswitches.

Authors:  K H Link; R R Breaker
Journal:  Gene Ther       Date:  2009-07-09       Impact factor: 5.250

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.