Literature DB >> 17237203

H3 and H4 histone tails play a central role in the interactions of recombinant NCPs.

Aurélie Bertin1, Madalena Renouard, Jan Skov Pedersen, Françoise Livolant, Dominique Durand.   

Abstract

Using small-angle x-ray scattering, we probe the effect of histone tails on both internucleosomal interactions and nucleosome conformation. To get insight into the specific role of H3 and H4 histone tails, perfectly monodisperse recombinant nucleosome core particles were reconstituted, either intact or deprived of both H3 and H4 histone tails (gH3gH4). The main result is that H3 and H4 histone tails are necessary to induce attractive interactions between NCPs. A pair potential model was used to describe interactions between NCPs. At all salt concentrations, interactions between gH3gH4 NCPs are best described by repulsive interactions exclusively. For intact NCPs, an additional attractive term, with a 5-10 kT magnitude and 20 A range, is required to account for interparticle interactions above 50 mM monovalent salt. Regarding conformation, intact NCPs in solution are similar to NCPs in 3D crystals. gH3gH4 NCPs instead give rise to slightly different small-angle x-ray scattering curves that can be understood as a more opened conformation of the particle, where DNA ends are slightly detached from the core.

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Year:  2007        PMID: 17237203      PMCID: PMC1864844          DOI: 10.1529/biophysj.106.093815

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  44 in total

1.  Chromatin fiber folding: requirement for the histone H4 N-terminal tail.

Authors:  Benedetta Dorigo; Thomas Schalch; Kerstin Bystricky; Timothy J Richmond
Journal:  J Mol Biol       Date:  2003-03-14       Impact factor: 5.469

2.  Rapid spontaneous accessibility of nucleosomal DNA.

Authors:  Gu Li; Marcia Levitus; Carlos Bustamante; Jonathan Widom
Journal:  Nat Struct Mol Biol       Date:  2004-12-05       Impact factor: 15.369

3.  Computer modeling demonstrates that electrostatic attraction of nucleosomal DNA is mediated by histone tails.

Authors:  Nikolay Korolev; Alexander P Lyubartsev; Lars Nordenskiöld
Journal:  Biophys J       Date:  2006-03-24       Impact factor: 4.033

4.  Salt-induced conformation and interaction changes of nucleosome core particles.

Authors:  Stéphanie Mangenot; Amélie Leforestier; Patrice Vachette; Dominique Durand; Françoise Livolant
Journal:  Biophys J       Date:  2002-01       Impact factor: 4.033

5.  Crystal structure of the nucleosome core particle at 2.8 A resolution.

Authors:  K Luger; A W Mäder; R K Richmond; D F Sargent; T J Richmond
Journal:  Nature       Date:  1997-09-18       Impact factor: 49.962

6.  Use of selectively trypsinized nucleosome core particles to analyze the role of the histone "tails" in the stabilization of the nucleosome.

Authors:  J Ausio; F Dong; K E van Holde
Journal:  J Mol Biol       Date:  1989-04-05       Impact factor: 5.469

7.  Mechanism of protein access to specific DNA sequences in chromatin: a dynamic equilibrium model for gene regulation.

Authors:  K J Polach; J Widom
Journal:  J Mol Biol       Date:  1995-11-24       Impact factor: 5.469

8.  Effects of urea and trimethylamine-N-oxide (TMAO) on the interactions of lysozyme in solution.

Authors:  Marc Niebuhr; Michel H J Koch
Journal:  Biophys J       Date:  2005-06-24       Impact factor: 4.033

9.  The core histone N-terminal tail domains function independently and additively during salt-dependent oligomerization of nucleosomal arrays.

Authors:  Faye Gordon; Karolin Luger; Jeffrey C Hansen
Journal:  J Biol Chem       Date:  2005-07-19       Impact factor: 5.157

10.  Histone H3 and H4 N-termini interact with SIR3 and SIR4 proteins: a molecular model for the formation of heterochromatin in yeast.

Authors:  A Hecht; T Laroche; S Strahl-Bolsinger; S M Gasser; M Grunstein
Journal:  Cell       Date:  1995-02-24       Impact factor: 41.582

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  22 in total

1.  H2A and H2B tails are essential to properly reconstitute nucleosome core particles.

Authors:  Aurélie Bertin; Dominique Durand; Madalena Renouard; Françoise Livolant; Stéphanie Mangenot
Journal:  Eur Biophys J       Date:  2007-09-19       Impact factor: 1.733

2.  Histone octamer helical tubes suggest that an internucleosomal four-helix bundle stabilizes the chromatin fiber.

Authors:  Timothy D Frouws; Hugh-G Patterton; Bryan T Sewell
Journal:  Biophys J       Date:  2009-04-22       Impact factor: 4.033

3.  Elucidating internucleosome interactions and the roles of histone tails.

Authors:  Steven C Howell; Kurt Andresen; Isabel Jimenez-Useche; Chongli Yuan; Xiangyun Qiu
Journal:  Biophys J       Date:  2013-07-02       Impact factor: 4.033

4.  Effects of histone acetylation by Piccolo NuA4 on the structure of a nucleosome and the interactions between two nucleosomes.

Authors:  Ju Yeon Lee; Sijie Wei; Tae-Hee Lee
Journal:  J Biol Chem       Date:  2011-01-31       Impact factor: 5.157

5.  Clipping of flexible tails of histones H3 and H4 affects the structure and dynamics of the nucleosome.

Authors:  Nathan P Nurse; Isabel Jimenez-Useche; Ian Tad Smith; Chongli Yuan
Journal:  Biophys J       Date:  2013-03-05       Impact factor: 4.033

Review 6.  Effects of histone acetylation and CpG methylation on the structure of nucleosomes.

Authors:  Ju Yeon Lee; Tae-Hee Lee
Journal:  Biochim Biophys Acta       Date:  2012-05-22

7.  The Influence of Ionic Environment and Histone Tails on Columnar Order of Nucleosome Core Particles.

Authors:  Nikolay V Berezhnoy; Ying Liu; Abdollah Allahverdi; Renliang Yang; Chun-Jen Su; Chuan-Fa Liu; Nikolay Korolev; Lars Nordenskiöld
Journal:  Biophys J       Date:  2016-04-26       Impact factor: 4.033

8.  Electrostatic origin of salt-induced nucleosome array compaction.

Authors:  Nikolay Korolev; Abdollah Allahverdi; Ye Yang; Yanping Fan; Alexander P Lyubartsev; Lars Nordenskiöld
Journal:  Biophys J       Date:  2010-09-22       Impact factor: 4.033

Review 9.  Histone cleavage as a mechanism for epigenetic regulation: current insights and perspectives.

Authors:  P Zhou; E Wu; H B Alam; Y Li
Journal:  Curr Mol Med       Date:  2014       Impact factor: 2.222

10.  Computer modeling reveals that modifications of the histone tail charges define salt-dependent interaction of the nucleosome core particles.

Authors:  Ye Yang; Alexander P Lyubartsev; Nikolay Korolev; Lars Nordenskiöld
Journal:  Biophys J       Date:  2009-03-18       Impact factor: 4.033

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