Literature DB >> 23823239

Elucidating internucleosome interactions and the roles of histone tails.

Steven C Howell1, Kurt Andresen, Isabel Jimenez-Useche, Chongli Yuan, Xiangyun Qiu.   

Abstract

The nucleosome is the first level of genome organization and regulation in eukaryotes where negatively charged DNA is wrapped around largely positively charged histone proteins. Interaction between nucleosomes is dominated by electrostatics at long range and guided by specific contacts at short range, particularly involving their flexible histone tails. We have thus quantified how internucleosome interactions are modulated by salts (KCl, MgCl2) and histone tail deletions (H3, H4 N-terminal), using small-angle x-ray scattering and theoretical modeling. We found that measured effective charges at low salts are ∼1/5th of the theoretically predicted renormalized charges and that H4 tail deletion suppresses the attraction at high salts to a larger extent than H3 tail deletion.
Copyright © 2013 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2013        PMID: 23823239      PMCID: PMC3699757          DOI: 10.1016/j.bpj.2013.05.021

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  30 in total

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Authors:  M de Frutos; E Raspaud; A Leforestier; F Livolant
Journal:  Biophys J       Date:  2001-08       Impact factor: 4.033

Review 2.  Conformational dynamics of the chromatin fiber in solution: determinants, mechanisms, and functions.

Authors:  Jeffrey C Hansen
Journal:  Annu Rev Biophys Biomol Struct       Date:  2001-10-25

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Journal:  J Mol Biol       Date:  2003-03-14       Impact factor: 5.469

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Authors:  Timothy J Richmond; Curt A Davey
Journal:  Nature       Date:  2003-05-08       Impact factor: 49.962

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Authors:  I M Kulić; H Schiessel
Journal:  Phys Rev Lett       Date:  2003-10-01       Impact factor: 9.161

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Authors:  Nikolay Korolev; Yanping Fan; Alexander P Lyubartsev; Lars Nordenskiöld
Journal:  Curr Opin Struct Biol       Date:  2012-02-02       Impact factor: 6.809

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Journal:  Nature       Date:  1997-09-18       Impact factor: 49.962

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Journal:  J Mol Biol       Date:  1990-02-20       Impact factor: 5.469

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Journal:  J Biol Chem       Date:  1984-04-10       Impact factor: 5.157

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  8 in total

1.  Histone Acetylation Regulates Chromatin Accessibility: Role of H4K16 in Inter-nucleosome Interaction.

Authors:  Ruihan Zhang; Jochen Erler; Jörg Langowski
Journal:  Biophys J       Date:  2016-12-06       Impact factor: 4.033

2.  The Influence of Ionic Environment and Histone Tails on Columnar Order of Nucleosome Core Particles.

Authors:  Nikolay V Berezhnoy; Ying Liu; Abdollah Allahverdi; Renliang Yang; Chun-Jen Su; Chuan-Fa Liu; Nikolay Korolev; Lars Nordenskiöld
Journal:  Biophys J       Date:  2016-04-26       Impact factor: 4.033

Review 3.  Histone Tail Conformations: A Fuzzy Affair with DNA.

Authors:  Mohamed Ghoneim; Harrison A Fuchs; Catherine A Musselman
Journal:  Trends Biochem Sci       Date:  2021-02-04       Impact factor: 13.807

4.  The conformational state of the nucleosome entry-exit site modulates TATA box-specific TBP binding.

Authors:  Aaron R Hieb; Alexander Gansen; Vera Böhm; Jörg Langowski
Journal:  Nucleic Acids Res       Date:  2014-05-14       Impact factor: 16.971

5.  Linker histone defines structure and self-association behaviour of the 177 bp human chromatosome.

Authors:  Sai Wang; Vinod K Vogirala; Aghil Soman; Nikolay V Berezhnoy; Zhehui Barry Liu; Andrew S W Wong; Nikolay Korolev; Chun-Jen Su; Sara Sandin; Lars Nordenskiöld
Journal:  Sci Rep       Date:  2021-01-11       Impact factor: 4.379

6.  Modified Histone Peptides Linked to Magnetic Beads Reduce Binding Specificity.

Authors:  Jenna N Meanor; Albert J Keung; Balaji M Rao
Journal:  Int J Mol Sci       Date:  2022-02-01       Impact factor: 5.923

7.  Solution scattering and FRET studies on nucleosomes reveal DNA unwrapping effects of H3 and H4 tail removal.

Authors:  Kurt Andresen; Isabel Jimenez-Useche; Steven C Howell; Chongli Yuan; Xiangyun Qiu
Journal:  PLoS One       Date:  2013-11-12       Impact factor: 3.240

8.  Revealing transient structures of nucleosomes as DNA unwinds.

Authors:  Yujie Chen; Joshua M Tokuda; Traci Topping; Julie L Sutton; Steve P Meisburger; Suzette A Pabit; Lisa M Gloss; Lois Pollack
Journal:  Nucleic Acids Res       Date:  2014-07-02       Impact factor: 16.971

  8 in total

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