Literature DB >> 17215354

A precise packing sequence for self-assembled convex structures.

Ting Chen1, Zhenli Zhang, Sharon C Glotzer.   

Abstract

Molecular simulations of the self-assembly of cone-shaped particles with specific, attractive interactions are performed. Upon cooling from random initial conditions, we find that the cones self-assemble into clusters and that clusters comprised of particular numbers of cones (e.g., 4-17, 20, 27, 32, and 42) have a unique and precisely packed structure that is robust over a range of cone angles. These precise clusters form a sequence of structures at specific cluster sizes (a "precise packing sequence") that for small sizes is identical to that observed in evaporation-driven assembly of colloidal spheres. We further show that this sequence is reproduced and extended in simulations of two simple models of spheres self-assembling from random initial conditions subject to convexity constraints, including an initial spherical convexity constraint for moderate- and large-sized clusters. This sequence contains six of the most common virus capsid structures obtained in vivo, including large chiral clusters and a cluster that may correspond to several non-icosahedral, spherical virus capsids obtained in vivo. Our findings suggest that this precise packing sequence results from free energy minimization subject to convexity constraints and is applicable to a broad range of assembly processes.

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Year:  2007        PMID: 17215354      PMCID: PMC1783380          DOI: 10.1073/pnas.0604239104

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  41 in total

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Authors:  J D Hartgerink; E Beniash; S I Stupp
Journal:  Science       Date:  2001-11-23       Impact factor: 47.728

2.  Topologically linked protein rings in the bacteriophage HK97 capsid.

Authors:  W R Wikoff; L Liljas; R L Duda; H Tsuruta; R W Hendrix; J E Johnson
Journal:  Science       Date:  2000-09-22       Impact factor: 47.728

3.  A tiling approach to virus capsid assembly explaining a structural puzzle in virology.

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Journal:  J Theor Biol       Date:  2004-02-21       Impact factor: 2.691

4.  Virus shapes and buckling transitions in spherical shells.

Authors:  Jack Lidmar; Leonid Mirny; David R Nelson
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2003-11-25

5.  Self-assembly of mesoscopic metal-polymer amphiphiles.

Authors:  Sungho Park; Jung-Hyurk Lim; Sung-Wook Chung; Chad A Mirkin
Journal:  Science       Date:  2004-01-16       Impact factor: 47.728

6.  Viral self-assembly as a thermodynamic process.

Authors:  Robijn F Bruinsma; William M Gelbart; David Reguera; Joseph Rudnick; Roya Zandi
Journal:  Phys Rev Lett       Date:  2003-06-17       Impact factor: 9.161

7.  Chemistry. Colloidal molecules and beyond.

Authors:  Alfons van Blaaderen
Journal:  Science       Date:  2003-07-25       Impact factor: 47.728

8.  Dense packing and symmetry in small clusters of microspheres.

Authors:  Vinothan N Manoharan; Mark T Elsesser; David J Pine
Journal:  Science       Date:  2003-07-25       Impact factor: 47.728

9.  Physical principles in the construction of regular viruses.

Authors:  D L CASPAR; A KLUG
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1962

10.  Minor proteins, mobile arms and membrane-capsid interactions in the bacteriophage PRD1 capsid.

Authors:  Carmen San Martín; Juha T Huiskonen; Jaana K H Bamford; Sarah J Butcher; Stephen D Fuller; Dennis H Bamford; Roger M Burnett
Journal:  Nat Struct Biol       Date:  2002-10
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  26 in total

1.  Surface roughness directed self-assembly of patchy particles into colloidal micelles.

Authors:  Daniela J Kraft; Ran Ni; Frank Smallenburg; Michiel Hermes; Kisun Yoon; David A Weitz; Alfons van Blaaderen; Jan Groenewold; Marjolein Dijkstra; Willem K Kegel
Journal:  Proc Natl Acad Sci U S A       Date:  2012-06-19       Impact factor: 11.205

2.  The Robust Assembly of Small Symmetric Nanoshells.

Authors:  Jef Wagner; Roya Zandi
Journal:  Biophys J       Date:  2015-09-01       Impact factor: 4.033

3.  Self-Assembly of an Alphavirus Core-like Particle Is Distinguished by Strong Intersubunit Association Energy and Structural Defects.

Authors:  Joseph Che-Yen Wang; Chao Chen; Vamseedhar Rayaprolu; Suchetana Mukhopadhyay; Adam Zlotnick
Journal:  ACS Nano       Date:  2015-08-21       Impact factor: 15.881

4.  Dynamic pathways for viral capsid assembly.

Authors:  Michael F Hagan; David Chandler
Journal:  Biophys J       Date:  2006-03-24       Impact factor: 4.033

5.  Modeling Viral Capsid Assembly.

Authors:  Michael F Hagan
Journal:  Adv Chem Phys       Date:  2014       Impact factor: 1.000

6.  Symmetry, shape, and order.

Authors:  Antonio Trovato; Trinh Xuan Hoang; Jayanth R Banavar; Amos Maritan
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-21       Impact factor: 11.205

7.  Invariant polymorphism in virus capsid assembly.

Authors:  Hung D Nguyen; Vijay S Reddy; Charles L Brooks
Journal:  J Am Chem Soc       Date:  2009-02-25       Impact factor: 15.419

8.  Controlling viral capsid assembly with templating.

Authors:  Michael F Hagan
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2008-05-08

9.  Tilable nature of virus capsids and the role of topological constraints in natural capsid design.

Authors:  Ranjan V Mannige; Charles L Brooks
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2008-05-01

10.  Mechanisms of size control and polymorphism in viral capsid assembly.

Authors:  Oren M Elrad; Michael F Hagan
Journal:  Nano Lett       Date:  2008-10-25       Impact factor: 11.189

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