Literature DB >> 17207989

Single-molecule studies of nucleic acid motors.

Ralf Seidel1, Cees Dekker.   

Abstract

Nucleic acid motors comprise a variety of structurally, mechanistically and functionally very different enzymes. These motor proteins have in common the ability to directionally move DNA or RNA, or to move along DNA or RNA using a chemical energy source such as ATP. Recently, it became possible to study the action of a single motor on single DNA or RNA molecules in real time; this has provided unprecedented insight into the behavior and mechanism of these motors. As a result, the past few years have witnessed an enormous increase in such single-molecule studies of a variety of different motor systems. Particular highlights have included the investigation of the sequence-dependent behavior and helical tracking of motors, and the attainment of the ultimate (i.e. single base pair) resolution, which enables the detection of individual single base motor steps.

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Year:  2007        PMID: 17207989     DOI: 10.1016/j.sbi.2006.12.003

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  22 in total

Review 1.  RNA reactions one molecule at a time.

Authors:  Ignacio Tinoco; Gang Chen; Xiaohui Qu
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-04-14       Impact factor: 10.005

2.  Energetics at the DNA supercoiling transition.

Authors:  Hergen Brutzer; Nicholas Luzzietti; Daniel Klaue; Ralf Seidel
Journal:  Biophys J       Date:  2010-04-07       Impact factor: 4.033

3.  Probing molecular choreography through single-molecule biochemistry.

Authors:  Antoine M van Oijen; Nicholas E Dixon
Journal:  Nat Struct Mol Biol       Date:  2015-12       Impact factor: 15.369

4.  Type III restriction enzymes communicate in 1D without looping between their target sites.

Authors:  Subramanian P Ramanathan; Kara van Aelst; Alice Sears; Luke J Peakman; Fiona M Diffin; Mark D Szczelkun; Ralf Seidel
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-30       Impact factor: 11.205

Review 5.  A practical guide to single-molecule FRET.

Authors:  Rahul Roy; Sungchul Hohng; Taekjip Ha
Journal:  Nat Methods       Date:  2008-06       Impact factor: 28.547

6.  Subangstrom Measurements of Enzyme Function Using a Biological Nanopore, SPRNT.

Authors:  A H Laszlo; I M Derrrington; J H Gundlach
Journal:  Methods Enzymol       Date:  2016-12-07       Impact factor: 1.600

7.  Graphical models for inferring single molecule dynamics.

Authors:  Jonathan E Bronson; Jake M Hofman; Jingyi Fei; Ruben L Gonzalez; Chris H Wiggins
Journal:  BMC Bioinformatics       Date:  2010-10-26       Impact factor: 3.169

8.  Dependence of transcription-coupled DNA supercoiling on promoter strength in Escherichia coli topoisomerase I deficient strains.

Authors:  Xiaoduo Zhi; Fenfei Leng
Journal:  Gene       Date:  2012-11-29       Impact factor: 3.688

Review 9.  Mechanical design of translocating motor proteins.

Authors:  Wonmuk Hwang; Matthew J Lang
Journal:  Cell Biochem Biophys       Date:  2009-05-19       Impact factor: 2.194

Review 10.  EcoR124I: from plasmid-encoded restriction-modification system to nanodevice.

Authors:  James Youell; Keith Firman
Journal:  Microbiol Mol Biol Rev       Date:  2008-06       Impact factor: 11.056

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