Literature DB >> 17189425

Two G-rich regulatory elements located adjacent to and 440 nucleotides downstream of the core poly(A) site of the intronless melanocortin receptor 1 gene are critical for efficient 3' end processing.

Martin Dalziel1, Nuno Miguel Nunes, Andre Furger.   

Abstract

Cleavage and polyadenylation is an essential processing reaction required for the maturation of pre-mRNAs into stable, export- and translation-competent mature mRNA molecules. This reaction requires the assembly of a multimeric protein complex onto a bipartite core sequence element consisting of an AAUAAA hexamer and a GU/U-rich downstream sequence element. In this study we have analyzed 3' end processing of the human melanocortin 1 receptor gene (MC1R). The MC1R gene is an intron-free transcription unit, and its poly(A) site lacks a defined U/GU-rich element. We describe two G-rich sequence elements that are critical for efficient cleavage at the MC1R poly(A) site. The first element is located 30 nucleotides downstream of the cleavage site and acts as an essential closely positioned enhancer. The second G-rich region is positioned more than 440 nucleotides downstream of the MC1R processing site and is instrumental for optimal processing efficiency. Both G-rich sequences contain clusters of heterogeneous nuclear ribonucleoprotein binding motifs and act together to enhance cleavage at the MC1R poly(A) site.

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Year:  2006        PMID: 17189425      PMCID: PMC1820467          DOI: 10.1128/MCB.01821-06

Source DB:  PubMed          Journal:  Mol Cell Biol        ISSN: 0270-7306            Impact factor:   4.272


  60 in total

1.  Downstream sequence elements with different affinities for the hnRNP H/H' protein influence the processing efficiency of mammalian polyadenylation signals.

Authors:  George K Arhin; Monika Boots; Paramjeet S Bagga; Christine Milcarek; Jeffrey Wilusz
Journal:  Nucleic Acids Res       Date:  2002-04-15       Impact factor: 16.971

2.  Determination of the RNA binding specificity of the heterogeneous nuclear ribonucleoprotein (hnRNP) H/H'/F/2H9 family.

Authors:  M Caputi; A M Zahler
Journal:  J Biol Chem       Date:  2001-09-24       Impact factor: 5.157

Review 3.  G-quadruplex DNA structures--variations on a theme.

Authors:  T Simonsson
Journal:  Biol Chem       Date:  2001-04       Impact factor: 3.915

4.  Promoter proximal splice sites enhance transcription.

Authors:  Andre Furger; Justin M O'Sullivan; Alexandra Binnie; Barbara A Lee; Nick J Proudfoot
Journal:  Genes Dev       Date:  2002-11-01       Impact factor: 11.361

5.  Recognition of GU-rich polyadenylation regulatory elements by human CstF-64 protein.

Authors:  José Manuel Pérez Cañadillas; Gabriele Varani
Journal:  EMBO J       Date:  2003-06-02       Impact factor: 11.598

6.  Evidence that polyadenylation factor CPSF-73 is the mRNA 3' processing endonuclease.

Authors:  Kevin Ryan; Olga Calvo; James L Manley
Journal:  RNA       Date:  2004-04       Impact factor: 4.942

7.  The retroviruses human immunodeficiency virus type 1 and Moloney murine leukemia virus adopt radically different strategies to regulate promoter-proximal polyadenylation.

Authors:  A Furger; J Monks; N J Proudfoot
Journal:  J Virol       Date:  2001-12       Impact factor: 5.103

8.  SR splicing factors serve as adapter proteins for TAP-dependent mRNA export.

Authors:  Yingqun Huang; Renata Gattoni; James Stévenin; Joan A Steitz
Journal:  Mol Cell       Date:  2003-03       Impact factor: 17.970

Review 9.  Downstream elements of mammalian pre-mRNA polyadenylation signals: primary, secondary and higher-order structures.

Authors:  Margarita I Zarudnaya; Iryna M Kolomiets; Andriy L Potyahaylo; Dmytro M Hovorun
Journal:  Nucleic Acids Res       Date:  2003-03-01       Impact factor: 16.971

10.  A mechanism for the regulation of pre-mRNA 3' processing by human cleavage factor Im.

Authors:  Kirk M Brown; Gregory M Gilmartin
Journal:  Mol Cell       Date:  2003-12       Impact factor: 17.970

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  29 in total

Review 1.  Protein factors in pre-mRNA 3'-end processing.

Authors:  C R Mandel; Y Bai; L Tong
Journal:  Cell Mol Life Sci       Date:  2008-04       Impact factor: 9.261

2.  Essential role for the interaction between hnRNP H/F and a G quadruplex in maintaining p53 pre-mRNA 3'-end processing and function during DNA damage.

Authors:  Adrien Decorsière; Anne Cayrel; Stéphan Vagner; Stefania Millevoi
Journal:  Genes Dev       Date:  2011-02-01       Impact factor: 11.361

Review 3.  Ending the message: poly(A) signals then and now.

Authors:  Nick J Proudfoot
Journal:  Genes Dev       Date:  2011-09-01       Impact factor: 11.361

4.  RNA polymerase II kinetics in polo polyadenylation signal selection.

Authors:  Pedro A B Pinto; Telmo Henriques; Marta O Freitas; Torcato Martins; Rita G Domingues; Paulina S Wyrzykowska; Paula A Coelho; Alexandre M Carmo; Claudio E Sunkel; Nicholas J Proudfoot; Alexandra Moreira
Journal:  EMBO J       Date:  2011-05-20       Impact factor: 11.598

Review 5.  MC1R, the cAMP pathway, and the response to solar UV: extending the horizon beyond pigmentation.

Authors:  Jose C García-Borrón; Zalfa Abdel-Malek; Celia Jiménez-Cervantes
Journal:  Pigment Cell Melanoma Res       Date:  2014-05-30       Impact factor: 4.693

6.  A functional human Poly(A) site requires only a potent DSE and an A-rich upstream sequence.

Authors:  Nuno Miguel Nunes; Wencheng Li; Bin Tian; André Furger
Journal:  EMBO J       Date:  2010-03-25       Impact factor: 11.598

Review 7.  RNA G-Quadruplexes in Biology: Principles and Molecular Mechanisms.

Authors:  Marta M Fay; Shawn M Lyons; Pavel Ivanov
Journal:  J Mol Biol       Date:  2017-05-26       Impact factor: 5.469

8.  A physical and functional link between splicing factors promotes pre-mRNA 3' end processing.

Authors:  Stefania Millevoi; Adrien Decorsière; Clarisse Loulergue; Jason Iacovoni; Sandra Bernat; Michael Antoniou; Stéphan Vagner
Journal:  Nucleic Acids Res       Date:  2009-06-08       Impact factor: 16.971

9.  Regulation of transcription termination in the nematode Caenorhabditis elegans.

Authors:  Simon Haenni; Helen E Sharpe; Maria Gravato Nobre; Kerstin Zechner; Cathy Browne; Jonathan Hodgkin; André Furger
Journal:  Nucleic Acids Res       Date:  2009-09-09       Impact factor: 16.971

Review 10.  Molecular mechanisms of eukaryotic pre-mRNA 3' end processing regulation.

Authors:  Stefania Millevoi; Stéphan Vagner
Journal:  Nucleic Acids Res       Date:  2009-12-30       Impact factor: 16.971

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