Literature DB >> 17176029

"Four-dimensional" protein structures: examples from metalloproteins.

Marco Fragai1, Claudio Luchinat, Giacomo Parigi.   

Abstract

The fact that an object, for example, a protein, possesses a three-dimensional structure seems an obvious concept. However, when the object is flexible, the concept is less obvious. Growing experimental data over several decades show that proteins are not rigid objects, but they may sample more or less wide ranges of different conformations. To stress this concept, we propose to call the range of sampled conformations the "fourth dimension" of the protein structure. Nuclear magnetic resonance is a precious technique to define this fourth dimension. Examples of conformational heterogeneity taken from the realm of metalloproteins and their functional implications are discussed.

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Year:  2006        PMID: 17176029     DOI: 10.1021/ar050103s

Source DB:  PubMed          Journal:  Acc Chem Res        ISSN: 0001-4842            Impact factor:   22.384


  7 in total

1.  Global and local mobility of apocalmodulin monitored through fast-field cycling relaxometry.

Authors:  Valentina Borsi; Claudio Luchinat; Giacomo Parigi
Journal:  Biophys J       Date:  2009-09-16       Impact factor: 4.033

2.  Information content of long-range NMR data for the characterization of conformational heterogeneity.

Authors:  Witold Andrałojć; Konstantin Berlin; David Fushman; Claudio Luchinat; Giacomo Parigi; Enrico Ravera; Luca Sgheri
Journal:  J Biomol NMR       Date:  2015-06-05       Impact factor: 2.835

3.  Narrowing the conformational space sampled by two-domain proteins with paramagnetic probes in both domains.

Authors:  Soumyasri Dasgupta; Xiaoyu Hu; Peter H J Keizers; Wei-Min Liu; Claudio Luchinat; Malini Nagulapalli; Mark Overhand; Giacomo Parigi; Luca Sgheri; Marcellus Ubbink
Journal:  J Biomol NMR       Date:  2011-08-09       Impact factor: 2.835

4.  Solution structure and dynamics of S100A5 in the apo and Ca2+-bound states.

Authors:  Ivano Bertini; Soumyasri Das Gupta; Xiaoyu Hu; Tilemachos Karavelas; Claudio Luchinat; Giacomo Parigi; Jing Yuan
Journal:  J Biol Inorg Chem       Date:  2009-06-18       Impact factor: 3.358

Review 5.  Binding of small-molecule ligands to proteins: "what you see" is not always "what you get".

Authors:  David L Mobley; Ken A Dill
Journal:  Structure       Date:  2009-04-15       Impact factor: 5.006

Review 6.  Insights into domain-domain motions in proteins and RNA from solution NMR.

Authors:  Enrico Ravera; Loïc Salmon; Marco Fragai; Giacomo Parigi; Hashim Al-Hashimi; Claudio Luchinat
Journal:  Acc Chem Res       Date:  2014-08-22       Impact factor: 22.384

7.  Fever as an evolutionary agent to select immune complexes interfaces.

Authors:  Vlad Tofan; Alina Lenghel; Maristela Martins de Camargo; Razvan Costin Stan
Journal:  Immunogenetics       Date:  2022-05-11       Impact factor: 3.330

  7 in total

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