Literature DB >> 19536568

Solution structure and dynamics of S100A5 in the apo and Ca2+-bound states.

Ivano Bertini1, Soumyasri Das Gupta, Xiaoyu Hu, Tilemachos Karavelas, Claudio Luchinat, Giacomo Parigi, Jing Yuan.   

Abstract

S100A5 is a calcium binding protein of the S100 family, with one canonical and one S100-specific EF-hand motif per subunit. Although its function is still unknown, it has recently been reported to be one of the S100 proteins able to interact with the receptor for advanced glycation end products. The homodimeric solution structures of S100A5 in both the apo and the calcium(II)-loaded forms have been obtained, and show a conformational rearrangement upon calcium binding. This rearrangement involves, in particular, the hinge loop connecting the N-terminal and the C-terminal EF-hand domains, the reorientation of helix III with respect to helix IV, as common to several S100 proteins, and the elongation of helix IV. The details of the structural changes are important because they must be related to the different functions, still largely unknown, of the different members of the S100 family. For the first time for a full-length S100 protein, relaxation measurements were performed on both the apo and the calcium-bound forms. A quite large mobility was observed in the hinge loop, which is not quenched in the calcium form. The structural differences resulting upon calcium binding change the global shape and the distribution of hydrophobic and charged residues of the S100A5 homodimer in a modest but significantly different manner with respect to the closest homologues S100A4 and S100A6.

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Year:  2009        PMID: 19536568     DOI: 10.1007/s00775-009-0553-1

Source DB:  PubMed          Journal:  J Biol Inorg Chem        ISSN: 0949-8257            Impact factor:   3.358


  41 in total

Review 1.  Regulation of cell death: the calcium-apoptosis link.

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2.  Automated NMR structure calculation with CYANA.

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Journal:  Methods Mol Biol       Date:  2004

3.  "Four-dimensional" protein structures: examples from metalloproteins.

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Journal:  Acc Chem Res       Date:  2006-12       Impact factor: 22.384

4.  Clustered organization of S100 genes in human and mouse.

Authors:  K Ridinger; E C Ilg; F K Niggli; C W Heizmann; B W Schäfer
Journal:  Biochim Biophys Acta       Date:  1998-12-10

5.  Protein backbone angle restraints from searching a database for chemical shift and sequence homology.

Authors:  G Cornilescu; F Delaglio; A Bax
Journal:  J Biomol NMR       Date:  1999-03       Impact factor: 2.835

6.  Calcium-induced structural changes and domain autonomy in calmodulin.

Authors:  B E Finn; J Evenäs; T Drakenberg; J P Waltho; E Thulin; S Forsén
Journal:  Nat Struct Biol       Date:  1995-09

7.  A novel calcium-sensitive switch revealed by the structure of human S100B in the calcium-bound form.

Authors:  S P Smith; G S Shaw
Journal:  Structure       Date:  1998-02-15       Impact factor: 5.006

Review 8.  S100 proteins in mouse and man: from evolution to function and pathology (including an update of the nomenclature).

Authors:  Ingo Marenholz; Claus W Heizmann; Günter Fritz
Journal:  Biochem Biophys Res Commun       Date:  2004-10-01       Impact factor: 3.575

9.  Solution structure of calcium-free calmodulin.

Authors:  H Kuboniwa; N Tjandra; S Grzesiek; H Ren; C B Klee; A Bax
Journal:  Nat Struct Biol       Date:  1995-09

10.  Structural and motional changes induced in apo-S100A1 protein by the disulfide formation between its Cys 85 residue and beta-mercaptoethanol.

Authors:  Igor Zhukov; Andrzej Ejchart; Andrzej Bierzyński
Journal:  Biochemistry       Date:  2007-12-19       Impact factor: 3.162

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  10 in total

1.  Structural characterization of human S100A16, a low-affinity calcium binder.

Authors:  Elena Babini; Ivano Bertini; Valentina Borsi; Vito Calderone; Xiaoyu Hu; Claudio Luchinat; Giacomo Parigi
Journal:  J Biol Inorg Chem       Date:  2010-11-03       Impact factor: 3.358

2.  Solving the crystal structure of human calcium-free S100Z: the siege and conquer of one of the last S100 family strongholds.

Authors:  V Calderone; M Fragai; G Gallo; C Luchinat
Journal:  J Biol Inorg Chem       Date:  2017-01-10       Impact factor: 3.358

3.  Learning peptide recognition rules for a low-specificity protein.

Authors:  Lucas C Wheeler; Arden Perkins; Caitlyn E Wong; Michael J Harms
Journal:  Protein Sci       Date:  2020-10-05       Impact factor: 6.725

4.  Novel interactions of the TRTK12 peptide with S100 protein family members: specificity and thermodynamic characterization.

Authors:  Lucas N Wafer; Franco O Tzul; Pranav P Pandharipande; George I Makhatadze
Journal:  Biochemistry       Date:  2013-08-15       Impact factor: 3.162

5.  Conservation of Specificity in Two Low-Specificity Proteins.

Authors:  Lucas C Wheeler; Jeremy A Anderson; Anneliese J Morrison; Caitlyn E Wong; Michael J Harms
Journal:  Biochemistry       Date:  2017-12-29       Impact factor: 3.162

6.  Solution structure and dynamics of human S100A14.

Authors:  Ivano Bertini; Valentina Borsi; Linda Cerofolini; Soumyasri Das Gupta; Marco Fragai; Claudio Luchinat
Journal:  J Biol Inorg Chem       Date:  2012-11-30       Impact factor: 3.358

7.  Multiple Evolutionary Origins of Ubiquitous Cu2+ and Zn2+ Binding in the S100 Protein Family.

Authors:  Lucas C Wheeler; Micah T Donor; James S Prell; Michael J Harms
Journal:  PLoS One       Date:  2016-10-20       Impact factor: 3.240

Review 8.  Zooming into the Dark Side of Human Annexin-S100 Complexes: Dynamic Alliance of Flexible Partners.

Authors:  Judith Weisz; Vladimir N Uversky
Journal:  Int J Mol Sci       Date:  2020-08-16       Impact factor: 5.923

Review 9.  Friend or Foe: S100 Proteins in Cancer.

Authors:  Chantal Allgöwer; Anna-Laura Kretz; Silvia von Karstedt; Mathias Wittau; Doris Henne-Bruns; Johannes Lemke
Journal:  Cancers (Basel)       Date:  2020-07-24       Impact factor: 6.639

10.  Human S100A5 binds Ca2+ and Cu2+ independently.

Authors:  Lucas C Wheeler; Michael J Harms
Journal:  BMC Biophys       Date:  2017-11-22       Impact factor: 4.778

  10 in total

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