Literature DB >> 17174899

Quantitative proteomics analysis of the secretory pathway.

Annalyn Gilchrist1, Catherine E Au, Johan Hiding, Alexander W Bell, Julia Fernandez-Rodriguez, Souad Lesimple, Hisao Nagaya, Line Roy, Sara J C Gosline, Michael Hallett, Jacques Paiement, Robert E Kearney, Tommy Nilsson, John J M Bergeron.   

Abstract

We report more than 1400 proteins of the secretory-pathway proteome and provide spatial information on the relative presence of each protein in the rough and smooth ER Golgi cisternae and Golgi-derived COPI vesicles. The data support a role for COPI vesicles in recycling and cisternal maturation, showing that Golgi-resident proteins are present at a higher concentration than secretory cargo. Of the 1400 proteins, 345 were identified as previously uncharacterized. Of these, 230 had their subcellular location deduced by proteomics. This study provides a comprehensive catalog of the ER and Golgi proteomes with insight into their identity and function.

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Year:  2006        PMID: 17174899     DOI: 10.1016/j.cell.2006.10.036

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  188 in total

1.  Genome-wide RNAi screening identifies human proteins with a regulatory function in the early secretory pathway.

Authors:  Jeremy C Simpson; Brigitte Joggerst; Vibor Laketa; Fatima Verissimo; Cihan Cetin; Holger Erfle; Mariana G Bexiga; Vasanth R Singan; Jean-Karim Hériché; Beate Neumann; Alvaro Mateos; Jonathon Blake; Stephanie Bechtel; Vladimir Benes; Stefan Wiemann; Jan Ellenberg; Rainer Pepperkok
Journal:  Nat Cell Biol       Date:  2012-06-03       Impact factor: 28.824

2.  Shotgun proteomics of Aspergillus niger microsomes upon D-xylose induction.

Authors:  José Miguel P Ferreira de Oliveira; Mark W J van Passel; Peter J Schaap; Leo H de Graaff
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3.  Mass spectrometry in high-throughput proteomics: ready for the big time.

Authors:  Tommy Nilsson; Matthias Mann; Ruedi Aebersold; John R Yates; Amos Bairoch; John J M Bergeron
Journal:  Nat Methods       Date:  2010-09       Impact factor: 28.547

Review 4.  Overcoming key technological challenges in using mass spectrometry for mapping cell surfaces in tissues.

Authors:  Noelle M Griffin; Jan E Schnitzer
Journal:  Mol Cell Proteomics       Date:  2010-06-14       Impact factor: 5.911

5.  Mapping proteins with spatial proteomics.

Authors:  Vivien Marx
Journal:  Nat Methods       Date:  2015-09       Impact factor: 28.547

6.  Membrane Proteomes and Ion Transporters in Bacillus anthracis and Bacillus subtilis Dormant and Germinating Spores.

Authors:  Yan Chen; Bidisha Barat; W Keith Ray; Richard F Helm; Stephen B Melville; David L Popham
Journal:  J Bacteriol       Date:  2019-02-25       Impact factor: 3.490

Review 7.  Comparative analysis of the liver and plasma proteomes as a novel and powerful strategy for hepatocellular carcinoma biomarker discovery.

Authors:  Laura Beretta
Journal:  Cancer Lett       Date:  2009-02-15       Impact factor: 8.679

8.  Photo-leucine incorporation reveals the target of a cyclodepsipeptide inhibitor of cotranslational translocation.

Authors:  Andrew L MacKinnon; Jennifer L Garrison; Ramanujan S Hegde; Jack Taunton
Journal:  J Am Chem Soc       Date:  2007-11-06       Impact factor: 15.419

9.  Precision mapping of the human O-GalNAc glycoproteome through SimpleCell technology.

Authors:  Catharina Steentoft; Sergey Y Vakhrushev; Hiren J Joshi; Yun Kong; Malene B Vester-Christensen; Katrine T-B G Schjoldager; Kirstine Lavrsen; Sally Dabelsteen; Nis B Pedersen; Lara Marcos-Silva; Ramneek Gupta; Eric Paul Bennett; Ulla Mandel; Søren Brunak; Hans H Wandall; Steven B Levery; Henrik Clausen
Journal:  EMBO J       Date:  2013-04-12       Impact factor: 11.598

10.  Quantitative organellar proteomics analysis of rough endoplasmic reticulum from normal and acute pancreatitis rat pancreas.

Authors:  Xuequn Chen; Maria Dolors Sans; John R Strahler; Alla Karnovsky; Stephen A Ernst; George Michailidis; Philip C Andrews; John A Williams
Journal:  J Proteome Res       Date:  2010-02-05       Impact factor: 4.466

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