Literature DB >> 17173026

Synthetic RNA circuits.

Eric A Davidson1, Andrew D Ellington.   

Abstract

Natural and engineered RNA 'parts' can perform a variety of functions, including hybridizing to targets, binding ligands and undergoing programmed conformational changes, and catalyzing reactions. These RNA parts can in turn be assembled into synthetic genetic circuits that regulate gene expression by acting either in cis or in trans on mRNAs. As more parts are discovered and engineered, it should be increasingly possible to create synthetic RNA circuits that are able to carry out complex logical operations in cells, either superimposed on or autonomous to extant gene regulation.

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Year:  2007        PMID: 17173026     DOI: 10.1038/nchembio846

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  27 in total

1.  Tracking, tuning, and terminating microbial physiology using synthetic riboregulators.

Authors:  Jarred M Callura; Daniel J Dwyer; Farren J Isaacs; Charles R Cantor; James J Collins
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-16       Impact factor: 11.205

Review 2.  Foundations for the design and implementation of synthetic genetic circuits.

Authors:  Adrian L Slusarczyk; Allen Lin; Ron Weiss
Journal:  Nat Rev Genet       Date:  2012-05-18       Impact factor: 53.242

3.  Ligand-induced folding of the guanine-sensing riboswitch is controlled by a combined predetermined induced fit mechanism.

Authors:  Otmar M Ottink; Sumientra M Rampersad; Marco Tessari; Guido J R Zaman; Hans A Heus; Sybren S Wijmenga
Journal:  RNA       Date:  2007-10-24       Impact factor: 4.942

4.  Direct selection for ribozyme cleavage activity in cells.

Authors:  Xi Chen; Lisa Denison; Matthew Levy; Andrew D Ellington
Journal:  RNA       Date:  2009-09-23       Impact factor: 4.942

Review 5.  Biocomputers: from test tubes to live cells.

Authors:  Yaakov Benenson
Journal:  Mol Biosyst       Date:  2009-04-15

6.  Pentatricopeptide repeats: modular blocks for building RNA-binding proteins.

Authors:  Aleksandra Filipovska; Oliver Rackham
Journal:  RNA Biol       Date:  2013-04-23       Impact factor: 4.652

7.  Avoiding transcription factor competition at promoter level increases the chances of obtaining oscillation.

Authors:  Andreea Munteanu; Marco Constante; Mark Isalan; Ricard V Solé
Journal:  BMC Syst Biol       Date:  2010-05-17

8.  Selecting RNA aptamers for synthetic biology: investigating magnesium dependence and predicting binding affinity.

Authors:  James M Carothers; Jonathan A Goler; Yuvraaj Kapoor; Lesley Lara; Jay D Keasling
Journal:  Nucleic Acids Res       Date:  2010-02-16       Impact factor: 16.971

Review 9.  Riboactivators: transcription activation by noncoding RNA.

Authors:  Aseem Z Ansari
Journal:  Crit Rev Biochem Mol Biol       Date:  2009 Jan-Feb       Impact factor: 8.250

10.  Molecular dynamics simulation study of the binding of purine bases to the aptamer domain of the guanine sensing riboswitch.

Authors:  Alessandra Villa; Jens Wöhnert; Gerhard Stock
Journal:  Nucleic Acids Res       Date:  2009-06-10       Impact factor: 16.971

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