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Literature DB >> 11233979

New insight into RNase P RNA structure from comparative analysis of the archaeal RNA.

J K Harris¹, E S Haas, D Williams, D N Frank, J W Brown.

Abstract

A detailed comparative analysis of archaeal RNase P RNA structure and a comparison of the resulting structural information with that of the bacterial RNA reveals that the archaeal RNase P RNAs are strikingly similar to those of Bacteria. The differences between the secondary structure models of archaeal and bacterial RNase P RNA have largely disappeared, and even variation in the sequence and structure of the RNAs are similar in extent and type. The structure of the cruciform (P7-11) has been reevaluated on the basis of a total of 321 bacterial and archaeal sequences, leading to a model for the structure of this region of the RNA that includes an extension to P11 that consistently organizes the cruciform and adjacent highly-conserved sequences.

Entities: Gene

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Year: 2001 PMID： 11233979 PMCID： PMC1370080 DOI： 10.1017/s1355838201001777

Source DB: PubMed Journal: RNA ISSN： 1355-8382 Impact factor: 4.942

53 in total

1. Analysis of the tertiary structure of the ribonuclease P ribozyme-substrate complex by site-specific photoaffinity crosslinking.

Authors: M E Harris; A V Kazantsev; J L Chen; N R Pace
Journal: RNA Date: 1997-06 Impact factor: 4.942

2. Identification of the universally conserved core of ribonuclease P RNA.

Authors: J L Chen; N R Pace
Journal: RNA Date: 1997-06 Impact factor: 4.942

3. Phylogenetic evidence for a new tertiary interaction in bacterial RNase P RNAs.

Authors: C Massire; L Jaeger; E Westhof
Journal: RNA Date: 1997-06 Impact factor: 4.942

4. Remarkable morphological variability of a common RNA folding motif: the GNRA tetraloop-receptor interaction.

Authors: D L Abramovitz; A M Pyle
Journal: J Mol Biol Date: 1997-02-28 Impact factor: 5.469

5. Ribonuclease P RNA: models of the 15/16 bulge from Escherichia coli and the P15 stem loop of Bacillus subtilis.

Authors: T R Easterwood; S C Harvey
Journal: RNA Date: 1997-06 Impact factor: 4.942

6. Comparative analysis of ribonuclease P RNA using gene sequences from natural microbial populations reveals tertiary structural elements.

Authors: J W Brown; J M Nolan; E S Haas; M A Rubio; F Major; N R Pace
Journal: Proc Natl Acad Sci U S A Date: 1996-04-02 Impact factor: 11.205

7. Comparative analysis of ribonuclease P RNA structure in Archaea.

Authors: E S Haas; D W Armbruster; B M Vucson; C J Daniels; J W Brown
Journal: Nucleic Acids Res Date: 1996-04-01 Impact factor: 16.971

8. Differentiation of Chlamydia spp. by sequence determination and restriction endonuclease cleavage of RNase P RNA genes.

Authors: B Herrmann; O Winqvist; J G Mattsson; L A Kirsebom
Journal: J Clin Microbiol Date: 1996-08 Impact factor: 5.948

9. Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii.

Authors: C J Bult; O White; G J Olsen; L Zhou; R D Fleischmann; G G Sutton; J A Blake; L M FitzGerald; R A Clayton; J D Gocayne; A R Kerlavage; B A Dougherty; J F Tomb; M D Adams; C I Reich; R Overbeek; E F Kirkness; K G Weinstock; J M Merrick; A Glodek; J L Scott; N S Geoghagen; J C Venter
Journal: Science Date: 1996-08-23 Impact factor: 47.728

49 in total

New insight into RNase P RNA structure from comparative analysis of the archaeal RNA.

1. Analysis of the tertiary structure of the ribonuclease P ribozyme-substrate complex by site-specific photoaffinity crosslinking.

2. Identification of the universally conserved core of ribonuclease P RNA.

3. Phylogenetic evidence for a new tertiary interaction in bacterial RNase P RNAs.

4. Remarkable morphological variability of a common RNA folding motif: the GNRA tetraloop-receptor interaction.

5. Ribonuclease P RNA: models of the 15/16 bulge from Escherichia coli and the P15 stem loop of Bacillus subtilis.

6. Comparative analysis of ribonuclease P RNA using gene sequences from natural microbial populations reveals tertiary structural elements.

7. Comparative analysis of ribonuclease P RNA structure in Archaea.

8. Differentiation of Chlamydia spp. by sequence determination and restriction endonuclease cleavage of RNase P RNA genes.

9. Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii.

1. Bacterial ribonuclease P holoenzyme crosslinking analysis reveals protein interaction sites on the RNA subunit.

2. Structure of Mth11/Mth Rpp29, an essential protein subunit of archaeal and eukaryotic RNase P.

3. In search of RNase P RNA from microbial genomes.

4. Heuristic RNA pseudoknot prediction including intramolecular kissing hairpins.

Review 5. Of proteins and RNA: the RNase P/MRP family.

6. In vitro selection of an archaeal RNase P RNA mimics natural variation.

7. Crystal structure of a bacterial ribonuclease P RNA.

8. Ribonuclease P: the evolution of an ancient RNA enzyme.

9. Functional reconstitution and characterization of Pyrococcus furiosus RNase P.

10. Saccharomyces SRP RNA secondary structures: a conserved S-domain and extended Alu-domain.