Literature DB >> 17160037

The art of gene function prediction.

T M Murali, Chang-Jiun Wu, Simon Kasif.   

Abstract

Mesh:

Year:  2006        PMID: 17160037     DOI: 10.1038/nbt1206-1474

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN: 1087-0156            Impact factor:   54.908


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  26 in total

1.  Biochemical networks: the evolution of gene annotation.

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2.  PiNGO: a Cytoscape plugin to find candidate genes in biological networks.

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Journal:  Bioinformatics       Date:  2011-01-28       Impact factor: 6.937

3.  Constructing the angiome: a global angiogenesis protein interaction network.

Authors:  Liang-Hui Chu; Corban G Rivera; Aleksander S Popel; Joel S Bader
Journal:  Physiol Genomics       Date:  2012-08-21       Impact factor: 3.107

4.  Interpretable network propagation with application to expanding the repertoire of human proteins that interact with SARS-CoV-2.

Authors:  Jeffrey N Law; Kyle Akers; Nure Tasnina; Catherine M Della Santina; Shay Deutsch; Meghana Kshirsagar; Judith Klein-Seetharaman; Mark Crovella; Padmavathy Rajagopalan; Simon Kasif; T M Murali
Journal:  Gigascience       Date:  2021-12-29       Impact factor: 6.524

5.  COMPUTATIONAL APPROACHES TO STUDY MICROBES AND MICROBIOMES.

Authors:  Casey S Greene; James A Foster; Bruce A Stanton; Deborah A Hogan; Yana Bromberg
Journal:  Pac Symp Biocomput       Date:  2016

6.  Identification of Key Components in Colon Adenocarcinoma Using Transcriptome to Interactome Multilayer Framework.

Authors:  Ehsan Pournoor; Zaynab Mousavian; Abbas Nowzari Dalini; Ali Masoudi-Nejad
Journal:  Sci Rep       Date:  2020-03-19       Impact factor: 4.379

7.  Global alignment of multiple protein interaction networks with application to functional orthology detection.

Authors:  Rohit Singh; Jinbo Xu; Bonnie Berger
Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-25       Impact factor: 11.205

8.  Exploring the human genome with functional maps.

Authors:  Curtis Huttenhower; Erin M Haley; Matthew A Hibbs; Vanessa Dumeaux; Daniel R Barrett; Hilary A Coller; Olga G Troyanskaya
Journal:  Genome Res       Date:  2009-02-26       Impact factor: 9.043

9.  Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins.

Authors:  Pingzhao Hu; Sarath Chandra Janga; Mohan Babu; J Javier Díaz-Mejía; Gareth Butland; Wenhong Yang; Oxana Pogoutse; Xinghua Guo; Sadhna Phanse; Peter Wong; Shamanta Chandran; Constantine Christopoulos; Anaies Nazarians-Armavil; Negin Karimi Nasseri; Gabriel Musso; Mehrab Ali; Nazila Nazemof; Veronika Eroukova; Ashkan Golshani; Alberto Paccanaro; Jack F Greenblatt; Gabriel Moreno-Hagelsieb; Andrew Emili
Journal:  PLoS Biol       Date:  2009-04-28       Impact factor: 8.029

10.  An efficient weighted graph strategy to identify differentiation associated genes in embryonic stem cells.

Authors:  Jie Zhang; Li Li; Luying Peng; Yingxian Sun; Jue Li
Journal:  PLoS One       Date:  2013-04-26       Impact factor: 3.240

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