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Literature DB >> 20016491

Biochemical networks: the evolution of gene annotation.

Simon Kasif, Martin Steffen.

Abstract

Entities: Chemical Species

Mesh：

Substances：
Proteins

Year: 2010 PMID： 20016491 PMCID： PMC2907659 DOI： 10.1038/nchembio.288

Source DB: PubMed Journal: Nat Chem Biol ISSN： 1552-4450 Impact factor: 15.040

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11 in total

1. Who's your neighbor? New computational approaches for functional genomics.

Authors: M Y Galperin; E V Koonin
Journal: Nat Biotechnol Date: 2000-06 Impact factor: 54.908

2. A Bayesian networks approach for predicting protein-protein interactions from genomic data.

Authors: Ronald Jansen; Haiyuan Yu; Dov Greenbaum; Yuval Kluger; Nevan J Krogan; Sambath Chung; Andrew Emili; Michael Snyder; Jack F Greenblatt; Mark Gerstein
Journal: Science Date: 2003-10-17 Impact factor: 47.728

3. Computational identification of operons in microbial genomes.

Authors: Yu Zheng; Joseph D Szustakowski; Lance Fortnow; Richard J Roberts; Simon Kasif
Journal: Genome Res Date: 2002-08 Impact factor: 9.043

4. The art of gene function prediction.

Authors: T M Murali; Chang-Jiun Wu; Simon Kasif
Journal: Nat Biotechnol Date: 2006-12 Impact factor: 54.908

Review 5. Computational protein function prediction: are we making progress?

Authors: A Godzik; M Jambon; I Friedberg
Journal: Cell Mol Life Sci Date: 2007-10 Impact factor: 9.261

Review 6. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

Authors: S F Altschul; T L Madden; A A Schäffer; J Zhang; Z Zhang; W Miller; D J Lipman
Journal: Nucleic Acids Res Date: 1997-09-01 Impact factor: 16.971

7. The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes.

Authors: Ross Overbeek; Tadhg Begley; Ralph M Butler; Jomuna V Choudhuri; Han-Yu Chuang; Matthew Cohoon; Valérie de Crécy-Lagard; Naryttza Diaz; Terry Disz; Robert Edwards; Michael Fonstein; Ed D Frank; Svetlana Gerdes; Elizabeth M Glass; Alexander Goesmann; Andrew Hanson; Dirk Iwata-Reuyl; Roy Jensen; Neema Jamshidi; Lutz Krause; Michael Kubal; Niels Larsen; Burkhard Linke; Alice C McHardy; Folker Meyer; Heiko Neuweger; Gary Olsen; Robert Olson; Andrei Osterman; Vasiliy Portnoy; Gordon D Pusch; Dmitry A Rodionov; Christian Rückert; Jason Steiner; Rick Stevens; Ines Thiele; Olga Vassieva; Yuzhen Ye; Olga Zagnitko; Veronika Vonstein
Journal: Nucleic Acids Res Date: 2005-10-07 Impact factor: 16.971

8. Identifying protein function--a call for community action.

Authors: Richard J Roberts
Journal: PLoS Biol Date: 2004-03-16 Impact factor: 8.029

9. The National Center for Biotechnology Information's Protein Clusters Database.

Authors: William Klimke; Richa Agarwala; Azat Badretdin; Slava Chetvernin; Stacy Ciufo; Boris Fedorov; Boris Kiryutin; Kathleen O'Neill; Wolfgang Resch; Sergei Resenchuk; Susan Schafer; Igor Tolstoy; Tatiana Tatusova
Journal: Nucleic Acids Res Date: 2008-10-21 Impact factor: 16.971

10. The Pfam protein families database.

Authors: Robert D Finn; John Tate; Jaina Mistry; Penny C Coggill; Stephen John Sammut; Hans-Rudolf Hotz; Goran Ceric; Kristoffer Forslund; Sean R Eddy; Erik L L Sonnhammer; Alex Bateman
Journal: Nucleic Acids Res Date: 2007-11-26 Impact factor: 16.971

3 in total