Literature DB >> 17139324

Signature-tagged mutagenesis: barcoding mutants for genome-wide screens.

Piotr Mazurkiewicz1, Christoph M Tang, Charles Boone, David W Holden.   

Abstract

DNA signature tags (molecular barcodes) facilitate functional screens by identifying mutants in mixed populations that have a reduced or increased adaptation to a particular environment. Many innovative adaptations and refinements in the technology have been described since its original use with Salmonella; they have yielded a wealth of information on a broad range of biological processes--mainly in bacteria, but also in yeast and other fungi, viruses, parasites and, most recently, in mammalian cells. By combining whole-genome microarrays and comprehensive ordered libraries of mutants, high-throughput functional screens can now be achieved on a genomic scale.

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Year:  2006        PMID: 17139324     DOI: 10.1038/nrg1984

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  56 in total

1.  Retrospective application of transposon-directed insertion site sequencing to a library of signature-tagged mini-Tn5Km2 mutants of Escherichia coli O157:H7 screened in cattle.

Authors:  Sabine E Eckert; Francis Dziva; Roy R Chaudhuri; Gemma C Langridge; Daniel J Turner; Derek J Pickard; Duncan J Maskell; Nicholas R Thomson; Mark P Stevens
Journal:  J Bacteriol       Date:  2011-01-28       Impact factor: 3.490

Review 2.  A dynamic view of the spread and intracellular distribution of Salmonella enterica.

Authors:  Pietro Mastroeni; Andrew Grant; Olivier Restif; Duncan Maskell
Journal:  Nat Rev Microbiol       Date:  2009-01       Impact factor: 60.633

Review 3.  Signature tagged mutagenesis in the functional genetic analysis of gastrointestinal pathogens.

Authors:  Joanne Cummins; Cormac G M Gahan
Journal:  Gut Microbes       Date:  2012-03-01

4.  Large-scale mapping of transposable element insertion sites using digital encoding of sample identity.

Authors:  Daryl M Gohl; Limor Freifeld; Marion Silies; Jennifer J Hwa; Mark Horowitz; Thomas R Clandinin
Journal:  Genetics       Date:  2013-12-27       Impact factor: 4.562

5.  Integrated analysis of receptor activation and downstream signaling with EXTassays.

Authors:  Anna Botvinnik; Sven P Wichert; Tobias M Fischer; Moritz J Rossner
Journal:  Nat Methods       Date:  2009-12-13       Impact factor: 28.547

Review 6.  Vaccinology in the genome era.

Authors:  C Daniela Rinaudo; John L Telford; Rino Rappuoli; Kate L Seib
Journal:  J Clin Invest       Date:  2009-09       Impact factor: 14.808

7.  Exploring the fitness landscape of an RNA virus by using a universal barcode microarray.

Authors:  Adam S Lauring; Raul Andino
Journal:  J Virol       Date:  2011-02-02       Impact factor: 5.103

8.  High-throughput, signature-tagged mutagenic approach to identify novel virulence factors of Yersinia pestis CO92 in a mouse model of infection.

Authors:  Duraisamy Ponnusamy; Eric C Fitts; Jian Sha; Tatiana E Erova; Elena V Kozlova; Michelle L Kirtley; Bethany L Tiner; Jourdan A Andersson; Ashok K Chopra
Journal:  Infect Immun       Date:  2015-03-09       Impact factor: 3.441

9.  High-throughput, quantitative analyses of genetic interactions in E. coli.

Authors:  Athanasios Typas; Robert J Nichols; Deborah A Siegele; Michael Shales; Sean R Collins; Bentley Lim; Hannes Braberg; Natsuko Yamamoto; Rikiya Takeuchi; Barry L Wanner; Hirotada Mori; Jonathan S Weissman; Nevan J Krogan; Carol A Gross
Journal:  Nat Methods       Date:  2008-09       Impact factor: 28.547

Review 10.  The key role of genomics in modern vaccine and drug design for emerging infectious diseases.

Authors:  Kate L Seib; Gordon Dougan; Rino Rappuoli
Journal:  PLoS Genet       Date:  2009-10-26       Impact factor: 5.917

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