Literature DB >> 21278291

Retrospective application of transposon-directed insertion site sequencing to a library of signature-tagged mini-Tn5Km2 mutants of Escherichia coli O157:H7 screened in cattle.

Sabine E Eckert1, Francis Dziva, Roy R Chaudhuri, Gemma C Langridge, Daniel J Turner, Derek J Pickard, Duncan J Maskell, Nicholas R Thomson, Mark P Stevens.   

Abstract

Massively parallel sequencing of transposon-flanking regions assigned the genotype and fitness score to 91% of Escherichia coli O157:H7 mutants previously screened in cattle by signature-tagged mutagenesis (STM). The method obviates the limitations of STM and markedly extended the functional annotation of the prototype E. coli O157:H7 genome without further animal use.

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Year:  2011        PMID： 21278291      PMCID： PMC3067669          DOI： 10.1128/JB.01292-10

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  28 in total

1.  Type 2 secretion promotes enterohemorrhagic Escherichia coli adherence and intestinal colonization.

Authors:  Theresa D Ho; Brigid M Davis; Jennifer M Ritchie; Matthew K Waldor
Journal:  Infect Immun       Date:  2008-03-03       Impact factor: 3.441

2.  RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays.

Authors:  John C Marioni; Christopher E Mason; Shrikant M Mane; Matthew Stephens; Yoav Gilad
Journal:  Genome Res       Date:  2008-06-11       Impact factor: 9.043

3.  Genome sequence of enterohaemorrhagic Escherichia coli O157:H7.

Authors:  N T Perna; G Plunkett; V Burland; B Mau; J D Glasner; D J Rose; G F Mayhew; P S Evans; J Gregor; H A Kirkpatrick; G Pósfai; J Hackett; S Klink; A Boutin; Y Shao; L Miller; E J Grotbeck; N W Davis; A Lim; E T Dimalanta; K D Potamousis; J Apodaca; T S Anantharaman; J Lin; G Yen; D C Schwartz; R A Welch; F R Blattner
Journal:  Nature       Date:  2001-01-25       Impact factor: 49.962

4.  StcE, a metalloprotease secreted by Escherichia coli O157:H7, specifically cleaves C1 esterase inhibitor.

Authors:  Wyndham W Lathem; Thomas E Grys; Sarah E Witowski; Alfredo G Torres; James B Kaper; Phillip I Tarr; Rodney A Welch
Journal:  Mol Microbiol       Date:  2002-07       Impact factor: 3.501

5.  Identifying genetic determinants needed to establish a human gut symbiont in its habitat.

Authors:  Andrew L Goodman; Nathan P McNulty; Yue Zhao; Douglas Leip; Robi D Mitra; Catherine A Lozupone; Rob Knight; Jeffrey I Gordon
Journal:  Cell Host Microbe       Date:  2009-09-17       Impact factor: 21.023

6.  Characterization of an Escherichia coli O157:H7 O-antigen deletion mutant and effect of the deletion on bacterial persistence in the mouse intestine and colonization at the bovine terminal rectal mucosa.

Authors:  Haiqing Sheng; Ji Youn Lim; Maryann K Watkins; Scott A Minnich; Carolyn J Hovde
Journal:  Appl Environ Microbiol       Date:  2008-06-13       Impact factor: 4.792

7.  Dissecting virulence: systematic and functional analyses of a pathogenicity island.

Authors:  Wanyin Deng; José L Puente; Samantha Gruenheid; Yuling Li; Bruce A Vallance; Alejandra Vázquez; Jeannette Barba; J Antonio Ibarra; Paul O'Donnell; Pavel Metalnikov; Keith Ashman; Sansan Lee; David Goode; Tony Pawson; B Brett Finlay
Journal:  Proc Natl Acad Sci U S A       Date:  2004-02-26       Impact factor: 11.205

8.  Tn-seq: high-throughput parallel sequencing for fitness and genetic interaction studies in microorganisms.

Authors:  Tim van Opijnen; Kip L Bodi; Andrew Camilli
Journal:  Nat Methods       Date:  2009-09-20       Impact factor: 28.547

9.  Mutation of toxB and a truncated version of the efa-1 gene in Escherichia coli O157:H7 influences the expression and secretion of locus of enterocyte effacement-encoded proteins but not intestinal colonization in calves or sheep.

Authors:  Mark P Stevens; Andrew J Roe; Isabella Vlisidou; Pauline M van Diemen; Roberto M La Ragione; Angus Best; Martin J Woodward; David L Gally; Timothy S Wallis
Journal:  Infect Immun       Date:  2004-09       Impact factor: 3.441

10.  Modulation of neutrophil function by a secreted mucinase of Escherichia coli O157:H7.

Authors:  Rose L Szabady; Mary A Lokuta; Kevin B Walters; Anna Huttenlocher; Rodney A Welch
Journal:  PLoS Pathog       Date:  2009-02-27       Impact factor: 6.823
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  21 in total

Review 1.  Signature tagged mutagenesis in the functional genetic analysis of gastrointestinal pathogens.

Authors:  Joanne Cummins; Cormac G M Gahan
Journal:  Gut Microbes       Date:  2012-03-01

2.  Identification of genes required by Bacillus thuringiensis for survival in soil by transposon-directed insertion site sequencing.

Authors:  Alistair H Bishop; Phillip A Rachwal; Alka Vaid
Journal:  Curr Microbiol       Date:  2013-12-06       Impact factor: 2.188

3.  Genome scanning for conditionally essential genes in Salmonella enterica Serotype Typhimurium.

Authors:  Anita Khatiwara; Tieshan Jiang; Sam-Sun Sung; Turki Dawoud; Jeong Nam Kim; Dhruva Bhattacharya; Hee-Bal Kim; Steven C Ricke; Young Min Kwon
Journal:  Appl Environ Microbiol       Date:  2012-02-24       Impact factor: 4.792

4.  Characterization of New Virulence Factors Involved in the Intracellular Growth and Survival of Burkholderia pseudomallei.

Authors:  Madeleine G Moule; Natasha Spink; Sam Willcocks; Jiali Lim; José Afonso Guerra-Assunção; Felipe Cia; Olivia L Champion; Nicola J Senior; Helen S Atkins; Taane Clark; Gregory J Bancroft; Jon Cuccui; Brendan W Wren
Journal:  Infect Immun       Date:  2015-12-28       Impact factor: 3.441

Review 5.  Rapid prototyping of microbial cell factories via genome-scale engineering.

Authors:  Tong Si; Han Xiao; Huimin Zhao
Journal:  Biotechnol Adv       Date:  2014-11-20       Impact factor: 14.227

6.  Identification of genes required for soil survival in Burkholderia thailandensis by transposon-directed insertion site sequencing.

Authors:  A H Bishop; P A Rachwal
Journal:  Curr Microbiol       Date:  2014-02-02       Impact factor: 2.188

7.  Determination of the Optimal Chromosomal Location(s) for a DNA Element in Escherichia coli Using a Novel Transposon-mediated Approach.

Authors:  Jakob Frimodt-Møller; Godefroid Charbon; Karen A Krogfelt; Anders Løbner-Olesen
Journal:  J Vis Exp       Date:  2017-09-11       Impact factor: 1.355

8.  BacFITBase: a database to assess the relevance of bacterial genes during host infection.

Authors:  Javier Macho Rendón; Benjamin Lang; Gian Gaetano Tartaglia; Marc Torrent Burgas
Journal:  Nucleic Acids Res       Date:  2020-01-08       Impact factor: 16.971

Review 9.  Transposon insertion sequencing: a new tool for systems-level analysis of microorganisms.

Authors:  Tim van Opijnen; Andrew Camilli
Journal:  Nat Rev Microbiol       Date:  2013-05-28       Impact factor: 60.633

10.  Mobile elements, zoonotic pathogens and commensal bacteria: conduits for the delivery of resistance genes into humans, production animals and soil microbiota.

Authors:  Steven P Djordjevic; Harold W Stokes; Piklu Roy Chowdhury
Journal:  Front Microbiol       Date:  2013-04-30       Impact factor: 5.640
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