Literature DB >> 17134317

Exact subthreshold integration with continuous spike times in discrete-time neural network simulations.

Abigail Morrison1, Sirko Straube, Hans Ekkehard Plesser, Markus Diesmann.   

Abstract

Very large networks of spiking neurons can be simulated efficiently in parallel under the constraint that spike times are bound to an equidistant time grid. Within this scheme, the subthreshold dynamics of a wide class of integrate-and-fire-type neuron models can be integrated exactly from one grid point to the next. However, the loss in accuracy caused by restricting spike times to the grid can have undesirable consequences, which has led to interest in interpolating spike times between the grid points to retrieve an adequate representation of network dynamics. We demonstrate that the exact integration scheme can be combined naturally with off-grid spike events found by interpolation. We show that by exploiting the existence of a minimal synaptic propagation delay, the need for a central event queue is removed, so that the precision of event-driven simulation on the level of single neurons is combined with the efficiency of time-driven global scheduling. Further, for neuron models with linear subthreshold dynamics, even local event queuing can be avoided, resulting in much greater efficiency on the single-neuron level. These ideas are exemplified by two implementations of a widely used neuron model. We present a measure for the efficiency of network simulations in terms of their integration error and show that for a wide range of input spike rates, the novel techniques we present are both more accurate and faster than standard techniques.

Mesh:

Year:  2007        PMID: 17134317     DOI: 10.1162/neco.2007.19.1.47

Source DB:  PubMed          Journal:  Neural Comput        ISSN: 0899-7667            Impact factor:   2.026


  44 in total

1.  Code generation: a strategy for neural network simulators.

Authors:  Dan F M Goodman
Journal:  Neuroinformatics       Date:  2010-10

2.  Spiking neural network simulation: memory-optimal synaptic event scheduling.

Authors:  Robert D Stewart; Kevin N Gurney
Journal:  J Comput Neurosci       Date:  2010-11-03       Impact factor: 1.621

Review 3.  Simulation of networks of spiking neurons: a review of tools and strategies.

Authors:  Romain Brette; Michelle Rudolph; Ted Carnevale; Michael Hines; David Beeman; James M Bower; Markus Diesmann; Abigail Morrison; Philip H Goodman; Frederick C Harris; Milind Zirpe; Thomas Natschläger; Dejan Pecevski; Bard Ermentrout; Mikael Djurfeldt; Anders Lansner; Olivier Rochel; Thierry Vieville; Eilif Muller; Andrew P Davison; Sami El Boustani; Alain Destexhe
Journal:  J Comput Neurosci       Date:  2007-07-12       Impact factor: 1.621

4.  Voltage-stepping schemes for the simulation of spiking neural networks.

Authors:  G Zheng; A Tonnelier; D Martinez
Journal:  J Comput Neurosci       Date:  2008-11-26       Impact factor: 1.621

5.  Detecting synfire chain activity using massively parallel spike train recording.

Authors:  Sven Schrader; Sonja Grün; Markus Diesmann; George L Gerstein
Journal:  J Neurophysiol       Date:  2008-07-16       Impact factor: 2.714

6.  A generalized linear integrate-and-fire neural model produces diverse spiking behaviors.

Authors:  Stefan Mihalaş; Ernst Niebur
Journal:  Neural Comput       Date:  2009-03       Impact factor: 2.026

7.  Accuracy evaluation of numerical methods used in state-of-the-art simulators for spiking neural networks.

Authors:  Stephan Henker; Johannes Partzsch; René Schüffny
Journal:  J Comput Neurosci       Date:  2011-08-12       Impact factor: 1.621

8.  Equilibrium and Response Properties of the Integrate-and-Fire Neuron in Discrete Time.

Authors:  Moritz Helias; Moritz Deger; Markus Diesmann; Stefan Rotter
Journal:  Front Comput Neurosci       Date:  2010-01-04       Impact factor: 2.380

9.  Towards reproducible descriptions of neuronal network models.

Authors:  Eilen Nordlie; Marc-Oliver Gewaltig; Hans Ekkehard Plesser
Journal:  PLoS Comput Biol       Date:  2009-08-07       Impact factor: 4.475

10.  Efficient identification of assembly neurons within massively parallel spike trains.

Authors:  Denise Berger; Christian Borgelt; Sebastien Louis; Abigail Morrison; Sonja Grün
Journal:  Comput Intell Neurosci       Date:  2009-09-29
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