Literature DB >> 17129126

Correlated hydrogen bonding fluctuations and vibrational cross peaks in N-methyl acetamide: simulation based on a complete electrostatic density functional theory map.

Tomoyuki Hayashi1, Shaul Mukamel.   

Abstract

The coherent nonlinear response of the entire amide line shapes of N-methyl acetamide to three infrared pulses is simulated using an electrostatic density functional theory map. Positive and negative cross peaks contain signatures of correlations between the fundamentals and the combination state. The amide I-A and I-III cross-peak line shapes indicate positive correlation and anticorrelation of frequency fluctuations, respectively. These can be ascribed to correlated hydrogen bonding at C[double bond]O and N-H sites. The amide I frequency is negatively correlated with the hydrogen bond on carbonyl C[double bond]O, whereas the amide A and III are negatively and positively correlated, respectively, with the hydrogen bond on amide N-H.

Entities:  

Mesh:

Substances:

Year:  2006        PMID: 17129126     DOI: 10.1063/1.2348865

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  6 in total

1.  Simulation and visualization of attosecond stimulated x-ray Raman spectroscopy signals in trans-N-methylacetamide at the nitrogen and oxygen K-edges.

Authors:  Daniel Healion; Haitao Wang; Shaul Mukamel
Journal:  J Chem Phys       Date:  2011-03-28       Impact factor: 3.488

2.  Two-Dimensional Vibrational Lineshapes of Amide III, II, I and A Bands in a Helical Peptide.

Authors:  Tomoyuki Hayashi; Shaul Mukamel
Journal:  J Mol Liq       Date:  2008-06-30       Impact factor: 6.165

3.  A strongly absorbing class of non-natural labels for probing protein electrostatics and solvation with FTIR and 2D IR spectroscopies.

Authors:  Ann Marie Woys; Sudipta S Mukherjee; David R Skoff; Sean D Moran; Martin T Zanni
Journal:  J Phys Chem B       Date:  2013-04-15       Impact factor: 2.991

4.  Applications of 2D IR spectroscopy to peptides, proteins, and hydrogen-bond dynamics.

Authors:  Yung Sam Kim; Robin M Hochstrasser
Journal:  J Phys Chem B       Date:  2009-06-18       Impact factor: 2.991

5.  Equilibrium exchange processes of the aqueous tryptophan dipeptide.

Authors:  Sayan Bagchi; Adam K Charnley; Amos B Smith Iii; Robin M Hochstrasser
Journal:  J Phys Chem B       Date:  2009-06-18       Impact factor: 2.991

Review 6.  Coherent multidimensional vibrational spectroscopy of biomolecules: concepts, simulations, and challenges.

Authors:  Wei Zhuang; Tomoyuki Hayashi; Shaul Mukamel
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.