Literature DB >> 17124866

Molecular paleoscience: systems biology from the past.

Steven A Benner1, Slim O Sassi, Eric A Gaucher.   

Abstract

Experimental paleomolecular biology, paleobiochemistry, and paleogenetics are closely related emerging fields that infer the sequences of ancient genes and proteins from now-extinct organisms, and then resurrect them for study in the laboratory. The goal of paleogenetics is to use information from natural history to solve the conundrum of modern genomics: How can we understand deeply the function of biomolecular structures uncovered and described by modern chemical biology? Reviewed here are the first 20 cases where biomolecular resurrections have been achieved. These show how paleogenetics can lead to an understanding of the function of biomolecules, analyze changing function, and put meaning to genomic sequences, all in ways that are not possible with traditional molecular biological studies.

Mesh:

Year:  2007        PMID: 17124866     DOI: 10.1002/9780471224464.ch1

Source DB:  PubMed          Journal:  Adv Enzymol Relat Areas Mol Biol        ISSN: 0065-258X


  28 in total

Review 1.  Setting the stage: the history, chemistry, and geobiology behind RNA.

Authors:  Steven A Benner; Hyo-Joong Kim; Zunyi Yang
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-01-01       Impact factor: 10.005

Review 2.  The planetary biology of ascorbate and uric acid and their relationship with the epidemic of obesity and cardiovascular disease.

Authors:  Richard J Johnson; Eric A Gaucher; Yuri Y Sautin; George N Henderson; Alex J Angerhofer; Steven A Benner
Journal:  Med Hypotheses       Date:  2008-03-10       Impact factor: 1.538

3.  A New Editorial Beginning at Journal of Molecular Evolution.

Authors:  David A Liberles
Journal:  J Mol Evol       Date:  2019-04       Impact factor: 2.395

Review 4.  Exoplanet Biosignatures: Future Directions.

Authors:  Sara I Walker; William Bains; Leroy Cronin; Shiladitya DasSarma; Sebastian Danielache; Shawn Domagal-Goldman; Betul Kacar; Nancy Y Kiang; Adrian Lenardic; Christopher T Reinhard; William Moore; Edward W Schwieterman; Evgenya L Shkolnik; Harrison B Smith
Journal:  Astrobiology       Date:  2018-06       Impact factor: 4.335

5.  Fish lateral line innovation: insights into the evolutionary genomic dynamics of a unique mechanosensory organ.

Authors:  Siby Philip; João Paulo Machado; Emanuel Maldonado; Vítor Vasconcelos; Stephen J O'Brien; Warren E Johnson; Agostinho Antunes
Journal:  Mol Biol Evol       Date:  2012-07-27       Impact factor: 16.240

Review 6.  Urzymology: experimental access to a key transition in the appearance of enzymes.

Authors:  Charles W Carter
Journal:  J Biol Chem       Date:  2014-09-10       Impact factor: 5.157

Review 7.  The dawn of evolutionary genome engineering.

Authors:  Csaba Pál; Balázs Papp; György Pósfai
Journal:  Nat Rev Genet       Date:  2014-05-28       Impact factor: 53.242

8.  Evolutionary Modes in Protein Observable Space: The Case of Thioredoxins.

Authors:  Sara Del Galdo; Josephine Alba; Andrea Amadei; Marco D'Abramo
Journal:  J Mol Evol       Date:  2019-05-25       Impact factor: 2.395

9.  Reconstructed ancestral enzymes reveal that negative selection drove the evolution of substrate specificity in ADP-dependent kinases.

Authors:  Víctor Castro-Fernandez; Alejandra Herrera-Morande; Ricardo Zamora; Felipe Merino; Felipe Gonzalez-Ordenes; Felipe Padilla-Salinas; Humberto M Pereira; Jose Brandão-Neto; Richard C Garratt; Victoria Guixe
Journal:  J Biol Chem       Date:  2017-07-18       Impact factor: 5.157

10.  Phylogenomic analyses reveal the evolutionary origin of the inhibin alpha-subunit, a unique TGFbeta superfamily antagonist.

Authors:  Jie Zhu; Edward L Braun; Satomi Kohno; Monica Antenos; Eugene Y Xu; Robert W Cook; S Jack Lin; Brandon C Moore; Louis J Guillette; Theodore S Jardetzky; Teresa K Woodruff
Journal:  PLoS One       Date:  2010-03-04       Impact factor: 3.240

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