Literature DB >> 17114948

Post-transcription meets post-genomic: the saga of RNA binding proteins in a new era.

Patricia Sanchez-Diaz1, Luiz O F Penalva.   

Abstract

Gene expression is regulated by a complex series of events that take place both at the transcriptional and post-transcriptional levels. The mechanisms and factors involved in transcriptional regulation are relatively well understood, whereas post-transcriptional regulation, in comparison, is still a poorly appreciated process. RNA binding proteins (RBPs) are the key regulators of all post-transcriptional events (RNA splicing, stability, transport and translation). Essentially, in order to improve our knowledge in post-transcriptional regulation, we need to elucidate the mechanisms employed by RBPs to control gene expression. The combination of genomic tools with traditional biochemical approaches generated novel technologies, like ribonomics. The application of these novel technologies not only had a profound impact in the study of RBPs but also created the ground work necessary for the identification of post-transcriptional gene networks; a selected group of mRNAs associated with a particular function or biological pathway/ process that is regulated by the same RBP. In this review article, we explore the latest achievements and discuss future challenges that lie ahead in the RBP world.

Entities:  

Mesh:

Substances:

Year:  2006        PMID: 17114948     DOI: 10.4161/rna.3.3.3373

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  29 in total

1.  Prediction of interactiveness of proteins and nucleic acids based on feature selections.

Authors:  YouLang Yuan; XiaoHe Shi; XinLei Li; WenCong Lu; YuDong Cai; Lei Gu; Liang Liu; MinJie Li; XiangYin Kong; Meng Xing
Journal:  Mol Divers       Date:  2009-10-09       Impact factor: 2.943

2.  Two-tiered approach identifies a network of cancer and liver disease-related genes regulated by miR-122.

Authors:  Daniel R Boutz; Patrick J Collins; Uthra Suresh; Mingzhu Lu; Cristina M Ramírez; Carlos Fernández-Hernando; Yufei Huang; Raquel de Sousa Abreu; Shu-Yun Le; Bruce A Shapiro; Angela M Liu; John M Luk; Shelley Force Aldred; Nathan D Trinklein; Edward M Marcotte; Luiz O F Penalva
Journal:  J Biol Chem       Date:  2011-03-14       Impact factor: 5.157

3.  RNA-binding protein Rbm47 binds to Nanog in mouse embryonic stem cells.

Authors:  Meghdad Yeganeh; Ehsan Seyedjafari; Farnaz Akbari Kamrani; Nasser Ghaemi
Journal:  Mol Biol Rep       Date:  2013-05-07       Impact factor: 2.316

4.  Pseudogenes: Four Decades of Discovery.

Authors:  Leonardo Salmena
Journal:  Methods Mol Biol       Date:  2021

5.  PUMILIO-2 is involved in the positive regulation of cellular proliferation in human adipose-derived stem cells.

Authors:  Patrícia Shigunov; Jose Sotelo-Silveira; Crisciele Kuligovski; Alessandra Melo de Aguiar; Carmen K Rebelatto; José A Moutinho; Paulo S Brofman; Marco A Krieger; Samuel Goldenberg; David Munroe; Alejandro Correa; Bruno Dallagiovanna
Journal:  Stem Cells Dev       Date:  2011-07-26       Impact factor: 3.272

6.  Pin1 regulates parathyroid hormone mRNA stability.

Authors:  Rajiv Kumar
Journal:  J Clin Invest       Date:  2009-09-21       Impact factor: 14.808

7.  Interaction between thymidylate synthase and its cognate mRNA in zebrafish embryos.

Authors:  Yuyan Zhang; Shaoli Yang; Ming Liu; Chunxia Song; Ning Wu; Peixue Ling; Edward Chu; Xiukun Lin
Journal:  PLoS One       Date:  2010-05-12       Impact factor: 3.240

8.  Untranslated regions of a mobile transcript mediate RNA metabolism.

Authors:  Anjan K Banerjee; Tian Lin; David J Hannapel
Journal:  Plant Physiol       Date:  2009-09-25       Impact factor: 8.340

Review 9.  The multilayered complexity of ceRNA crosstalk and competition.

Authors:  Yvonne Tay; John Rinn; Pier Paolo Pandolfi
Journal:  Nature       Date:  2014-01-16       Impact factor: 49.962

10.  A comprehensive in silico expression analysis of RNA binding proteins in normal and tumor tissue: Identification of potential players in tumor formation.

Authors:  Pedro A F Galante; Devraj Sandhu; Raquel de Sousa Abreu; Michael Gradassi; Natanja Slager; Christine Vogel; Sandro Jose de Souza; Luiz O F Penalva
Journal:  RNA Biol       Date:  2009-09-24       Impact factor: 4.652

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.