Literature DB >> 17114263

Translation control of trpG from transcripts originating from the folate operon promoter of Bacillus subtilis is influenced by translation-mediated displacement of bound TRAP, while translation control of transcripts originating from a newly identified trpG promoter is not.

Helen Yakhnin1, Alexander V Yakhnin, Paul Babitzke.   

Abstract

Bacillus subtilis trpG encodes a glutamine amidotransferase subunit that participates in the biosynthesis of both tryptophan and folic acid. TRAP inhibits translation of trpG in response to tryptophan by binding to a site that overlaps the trpG Shine-Dalgarno sequence, thereby blocking ribosome binding. Similar mechanisms regulate trpP and ycbK translation. The equilibrium binding constants of tryptophan-activated TRAP for the trpG, ycbK, and trpP transcripts were determined to be 8, 3, and 50 nM, respectively. Despite TRAP having a higher affinity for the trpG transcript, TRAP exhibited the least control of trpG expression. The trpG Shine-Dalgarno sequence overlaps the stop codon of the upstream pabB gene, while six of nine triplet repeats within the TRAP binding site are located upstream of the pabB stop codon. Thus, ribosomes translating the upstream pabB cistron could be capable of reducing TRAP-dependent control of TrpG synthesis by displacing bound TRAP. Expression studies using pabB-trpG'-'lacZ fusions in the presence or absence of an engineered stop codon within pabB suggest that translation-mediated displacement of bound TRAP reduces TRAP-dependent inhibition of TrpG synthesis from transcripts originating from the folate operon promoter (P(pabB)). A new trpG promoter (P(trpG)) was identified in the pabB coding sequence that makes a larger contribution to trpG expression than does P(pabB). We found that TRAP-dependent regulation of trpG expression is more extensive for a transcript originating from P(trpG) and that transcripts originating from P(trpG) are not subject to translation-mediated displacement of bound TRAP.

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Year:  2006        PMID: 17114263      PMCID: PMC1797321          DOI: 10.1128/JB.01398-06

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  31 in total

1.  The trp RNA-binding attenuation protein (TRAP) regulates the steady-state levels of transcripts of the Bacillus subtilis folate operon.

Authors:  Antoine de Saizieu; Pierre Vankan; Cassandra Vockler; Adolphus P G M van Loon
Journal:  Microbiology (Reading)       Date:  1997-03       Impact factor: 2.777

2.  The structure of trp RNA-binding attenuation protein.

Authors:  A A Antson; J Otridge; A M Brzozowski; E J Dodson; G G Dodson; K S Wilson; T M Smith; M Yang; T Kurecki; P Gollnick
Journal:  Nature       Date:  1995-04-20       Impact factor: 49.962

3.  The mtr locus is a two-gene operon required for transcription attenuation in the trp operon of Bacillus subtilis.

Authors:  P Gollnick; S Ishino; M I Kuroda; D J Henner; C Yanofsky
Journal:  Proc Natl Acad Sci U S A       Date:  1990-11       Impact factor: 11.205

4.  The trp RNA-binding attenuation protein regulates TrpG synthesis by binding to the trpG ribosome binding site of Bacillus subtilis.

Authors:  H Du; R Tarpey; P Babitzke
Journal:  J Bacteriol       Date:  1997-04       Impact factor: 3.490

5.  Translation of trpG in Bacillus subtilis is regulated by the trp RNA-binding attenuation protein (TRAP).

Authors:  M Yang; A de Saizieu; A P van Loon; P Gollnick
Journal:  J Bacteriol       Date:  1995-08       Impact factor: 3.490

6.  TRAP, the trp RNA-binding attenuation protein of Bacillus subtilis, is a toroid-shaped molecule that binds transcripts containing GAG or UAG repeats separated by two nucleotides.

Authors:  P Babitzke; D G Bear; C Yanofsky
Journal:  Proc Natl Acad Sci U S A       Date:  1995-08-15       Impact factor: 11.205

7.  trp RNA-binding attenuation protein (TRAP)-trp leader RNA interactions mediate translational as well as transcriptional regulation of the Bacillus subtilis trp operon.

Authors:  E Merino; P Babitzke; C Yanofsky
Journal:  J Bacteriol       Date:  1995-11       Impact factor: 3.490

Review 8.  Regulation of transcription attenuation and translation initiation by allosteric control of an RNA-binding protein: the Bacillus subtilis TRAP protein.

Authors:  Paul Babitzke
Journal:  Curr Opin Microbiol       Date:  2004-04       Impact factor: 7.934

9.  TRAP, the trp RNA-binding attenuation protein of Bacillus subtilis, is a multisubunit complex that appears to recognize G/UAG repeats in the trpEDCFBA and trpG transcripts.

Authors:  P Babitzke; J T Stults; S J Shire; C Yanofsky
Journal:  J Biol Chem       Date:  1994-06-17       Impact factor: 5.157

10.  Reconstitution of Bacillus subtilis trp attenuation in vitro with TRAP, the trp RNA-binding attenuation protein.

Authors:  P Babitzke; C Yanofsky
Journal:  Proc Natl Acad Sci U S A       Date:  1993-01-01       Impact factor: 11.205

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  7 in total

1.  Identification of a Residue (Glu60) in TRAP Required for Inducing Efficient Transcription Termination at the trp Attenuator Independent of Binding Tryptophan and RNA.

Authors:  Natalie M McAdams; Andrea Patterson; Paul Gollnick
Journal:  J Bacteriol       Date:  2017-02-28       Impact factor: 3.490

2.  Evolutionary diversification of protein-protein interactions by interface add-ons.

Authors:  Maximilian G Plach; Florian Semmelmann; Florian Busch; Markus Busch; Leonhard Heizinger; Vicki H Wysocki; Rainer Merkl; Reinhard Sterner
Journal:  Proc Natl Acad Sci U S A       Date:  2017-09-18       Impact factor: 11.205

3.  TRAP-5' stem loop interaction increases the efficiency of transcription termination in the Bacillus subtilis trpEDCFBA operon leader region.

Authors:  Adam P McGraw; Philip C Bevilacqua; Paul Babitzke
Journal:  RNA       Date:  2007-09-19       Impact factor: 4.942

4.  Physiological effects of anti-TRAP protein activity and tRNA(Trp) charging on trp operon expression in Bacillus subtilis.

Authors:  Luis R Cruz-Vera; Ming Gong; Charles Yanofsky
Journal:  J Bacteriol       Date:  2008-01-04       Impact factor: 3.490

5.  Molecular basis of TRAP-5'SL RNA interaction in the Bacillus subtilis trp operon transcription attenuation mechanism.

Authors:  Adam P McGraw; Ali Mokdad; François Major; Philip C Bevilacqua; Paul Babitzke
Journal:  RNA       Date:  2008-11-25       Impact factor: 4.942

6.  Positions of Trp codons in the leader peptide-coding region of the at operon influence anti-trap synthesis and trp operon expression in Bacillus licheniformis.

Authors:  Anastasia Levitin; Charles Yanofsky
Journal:  J Bacteriol       Date:  2010-01-08       Impact factor: 3.490

Review 7.  RNA-based regulation of genes of tryptophan synthesis and degradation, in bacteria.

Authors:  Charles Yanofsky
Journal:  RNA       Date:  2007-06-29       Impact factor: 4.942

  7 in total

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