Literature DB >> 17111465

Regularities in the E. coli promoters composition in connection with the DNA strands interaction and promoter activity.

Andrey Yu Berezhnoy1, Yuriy G Shckorbatov, Kiryu Hisanori.   

Abstract

The energy of interaction between DNA strands in promoters is of great functional importance. Visualization of the energy of DNA strands distribution in promoter sequences was achieved. The separation of promoters in groups by their energetic properties enables evaluation of the dependence of promoter strength on the energetic properties. The analysis of groups (clusters) of promoters distributed by the energy of DNA strands interaction in -55, -35, -10 and +6 sequences indicates their connection with the transcriptional activity.

Entities:  

Mesh：

Substances：

Year:  2006        PMID： 17111465      PMCID： PMC1661676          DOI： 10.1631/jzus.2006.B0969

Source DB:  PubMed          Journal:  J Zhejiang Univ Sci B        ISSN： 1673-1581            Impact factor:   3.066


  11 in total

1.  Kinetic studies and structural models of the association of E. coli sigma(70) RNA polymerase with the lambdaP(R) promoter: large scale conformational changes in forming the kinetically significant intermediates.

Authors:  Ruth M Saecker; Oleg V Tsodikov; Kristi L McQuade; Peter E Schlax; Michael W Capp; M Thomas Record
Journal:  J Mol Biol       Date:  2002-06-07       Impact factor: 5.469

2.  The KEGG resource for deciphering the genome.

Authors:  Minoru Kanehisa; Susumu Goto; Shuichi Kawashima; Yasushi Okuno; Masahiro Hattori
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

3.  Dependence of the E. coli promoter strength and physical parameters upon the nucleotide sequence.

Authors:  Andrey Y Berezhnoy; Yuriy G Shckorbatov
Journal:  J Zhejiang Univ Sci B       Date:  2005-11       Impact factor: 3.066

4.  DNA footprints of the two kinetically significant intermediates in formation of an RNA polymerase-promoter open complex: evidence that interactions with start site and downstream DNA induce sequential conformational changes in polymerase and DNA.

Authors:  M L Craig; O V Tsodikov; K L McQuade; P E Schlax; M W Capp; R M Saecker; M T Record
Journal:  J Mol Biol       Date:  1998-11-06       Impact factor: 5.469

5.  Base-specific recognition of the nontemplate strand of promoter DNA by E. coli RNA polymerase.

Authors:  C W Roberts; J W Roberts
Journal:  Cell       Date:  1996-08-09       Impact factor: 41.582

6.  Quantum mechanical study of bases interactions in various associates in atomic dipole approximation.

Authors:  Z G Kudritskaya; V I Danilov
Journal:  J Theor Biol       Date:  1976-07-07       Impact factor: 2.691

7.  sigma factor mutations affecting the sequence-selective interaction of RNA polymerase with -10 region single-stranded DNA.

Authors:  X Huang; F J Lopez de Saro; J D Helmann
Journal:  Nucleic Acids Res       Date:  1997-07-01       Impact factor: 16.971

8.  Recognition of the -10 promoter sequence by a partial polypeptide of sigma70 in vitro.

Authors:  A J Dombroski
Journal:  J Biol Chem       Date:  1997-02-07       Impact factor: 5.157

Review 9.  Compilation and analysis of Escherichia coli promoter DNA sequences.

Authors:  D K Hawley; W R McClure
Journal:  Nucleic Acids Res       Date:  1983-04-25       Impact factor: 16.971

Review 10.  Functional genomics of Escherichia coli in Japan.

Authors:  H Mori; K Isono; T Horiuchi; T Miki
Journal:  Res Microbiol       Date:  2000-03       Impact factor: 3.992
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.